Methods for in-solution quenching of fluorescently labeled oligo

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

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435 18, 435 911, 435 912, 536 2532, C07H 2104, C12P 1934, C12Q 168

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055716733

ABSTRACT:
The present invention provides methods of detecting a change in the length of an oligonucleotide labeled with a light-emitting label by measuring the light emission in the presence of a DNA binding compound that interacts with the label to modify the light emission of the label, wherein the degree of interaction depends on the length of the oligonucleotide. The methods are applicable in general to nucleic acid sequence detection assays that utilize a reaction that results in the selective cleavage of hybridized oligonucleotide probes, and, in particular, to amplification/detection assays wherein hybridized probes are cleaved concomitant with primer extension.

REFERENCES:
patent: 5210015 (1993-05-01), Gelfand et al.
Higuchi et al., Nuc. Acids Res. 17(14):5865, 1989.
Kingsbury et al. "Rapid Detection and Identification of Infectious Agents, " pp. 245-256, 1985.
Morrison, Nonisotopic DNA Probe Techniques, Academic Press, Inc., 1992, Chapter 13, entitled "Detection of Energy Transfer and Fluorescence Quenching".

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