Method of designing probe set, microarray having substrate...

Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C702S020000, C703S011000, C703S013000, C707S793000, C536S024500, C435S006120

Reexamination Certificate

active

07657381

ABSTRACT:
A method of designing a probe set for identifying a target sequence from a plurality of target sequence groups by a hybridization reaction is provided. The method includes: (a) selecting a first target sequence group including a plurality of target sequences; (b) selecting oligonucleotides specifically binding to the target sequences from the first target sequence group as a probe; (c) selecting one or more target sequences having no specifically binding probe from the first target sequence group as a second target sequence group; (d) selecting oligonucleotides specifically binding to the target sequences from the second target sequence group as a probe, wherein the operations (c) and (d) are repeated until a target sequence having no specifically binding probe is absent in the second target sequence group.

REFERENCES:
patent: 5143854 (1992-09-01), Pirrung et al.
patent: 5424186 (1995-06-01), Fodor et al.
patent: 5445934 (1995-08-01), Fodor et al.
patent: 5744305 (1998-04-01), Fodor et al.
patent: 7288371 (2007-10-01), Bavykin et al.
patent: 2002/0160401 (2002-10-01), Nozaki et al.
patent: 2003/0069701 (2003-04-01), Matsumoto et al.
patent: 2004/0101845 (2004-05-01), Collins et al.
patent: 2004/0157254 (2004-08-01), Kwon
patent: 1 237 114 (2002-09-01), None
patent: 2002-296279 (2002-10-01), None
patent: 2002-330768 (2002-11-01), None
patent: 2002-345480 (2002-12-01), None
patent: WO 03/031654 (2003-04-01), None
“Detection and Identification of Mycrobacterium Species Isolates by DNA Microarray”; Authors: Masao Fukushima, et al.; Journal of Clinical Microbiology; pp. 2605-2615 (2003).
European Search Report for Application No. 05019375.4-2405; Dated: Feb. 6, 2006.
Korean Intellectual Property Office, Notice to Submit Response w/English Translation dated: May 30, 2006.
Rouillard, JM et al., OligoArray: genome-scale oligonucleotide design for microarrays, Bioinformatics, vol. 18 No. 3, 2002, pp. 486-487.
Zhang, Z et al., Identification of characteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence dataset, Bioinformatics, vol. 18 No. 2, 2002, pp. 244-250.
Borneman, J et al., Probe selection algorithms with applications in the analysis of microbial communities, Bioinformatics, vol. 17, Suppl. 1, 2001, pp. S39-S48.

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Method of designing probe set, microarray having substrate... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Method of designing probe set, microarray having substrate..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Method of designing probe set, microarray having substrate... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-4196862

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.