Chemistry: molecular biology and microbiology – Micro-organism – tissue cell culture or enzyme using process... – Preparing compound containing saccharide radical
Reexamination Certificate
2006-06-19
2009-02-03
Riley, Jezia (Department: 1637)
Chemistry: molecular biology and microbiology
Micro-organism, tissue cell culture or enzyme using process...
Preparing compound containing saccharide radical
C435S006120, C435S091200, C536S024300, C536S026600
Reexamination Certificate
active
07485442
ABSTRACT:
Oligonucleotide probes/conjugates are provided along with method for their use in assays to monitor amplification wherein the signal produced does not rely on 5′ nuclease digestion.
REFERENCES:
patent: 4358535 (1982-11-01), Falkow et al.
patent: 4458066 (1984-07-01), Caruthers
patent: 4683195 (1987-07-01), Mullis et al.
patent: 4683202 (1987-07-01), Mullis
patent: 4800159 (1989-01-01), Mullis et al.
patent: 4835263 (1989-05-01), Nguyen et al.
patent: 4868103 (1989-09-01), Stavrianopoulos et al.
patent: 4868105 (1989-09-01), Urdea et al.
patent: 4883750 (1989-11-01), Whiteley et al.
patent: 5124246 (1992-06-01), Urdea et al.
patent: 5210015 (1993-05-01), Gelfand et al.
patent: 5237101 (1993-08-01), Nicolaou et al.
patent: 5419966 (1995-05-01), Reed et al.
patent: 5446137 (1995-08-01), Maag et al.
patent: 5449767 (1995-09-01), Ward et al.
patent: 5492806 (1996-02-01), Drmanac et al.
patent: 5512667 (1996-04-01), Reed et al.
patent: 5525464 (1996-06-01), Drmanac et al.
patent: 5556752 (1996-09-01), Lockhart et al.
patent: 5574142 (1996-11-01), Meyer, Jr. et al.
patent: 5646126 (1997-07-01), Cheng et al.
patent: 5659022 (1997-08-01), Kutyavin et al.
patent: 5776907 (1998-07-01), Kohn et al.
patent: 5786138 (1998-07-01), Swenson
patent: 5801155 (1998-09-01), Kutyavin et al.
patent: 6248518 (2001-06-01), Parkhurst et al.
patent: 6312894 (2001-11-01), Hedgpeth et al.
patent: 6448015 (2002-09-01), Parkhurst et al.
patent: 7348146 (2008-03-01), Belousov et al.
patent: 0 320 308 (1993-11-01), None
patent: 0 336 731 (1994-05-01), None
patent: 0 672 677 (1995-03-01), None
patent: WO 90/03370 (1990-04-01), None
patent: WO 90/14353 (1990-11-01), None
patent: WO 92/0588 (1992-06-01), None
patent: WO 92/20698 (1992-11-01), None
patent: WO 93/03736 (1993-03-01), None
patent: WO 94/17092 (1994-08-01), None
patent: WO 95/29184 (1995-11-01), None
patent: WO 96/17957 (1996-06-01), None
patent: WO 96/32496 (1996-10-01), None
patent: WO 96/40711 (1996-12-01), None
patent: WO 97/12896 (1997-04-01), None
patent: WO 98/02448 (1998-01-01), None
Afonina et al., “accurate snp typing by real-time pcr: a comparison of minor groove binder-conjugated dna probes”,Pharmagenomics, Jan./Feb. 2002, pp. 48-54 (XP002345315).
Kutyavin I. V. et al., “3—minor groove binder-DNA probes increase sequence specificity at pcr extension temperatures”,Nucleic Acids Research, Oxford University Press, Surrey, GB, vol. 28, No. 2, 2000, pp. 655-661 (XP002318952).
Afonina et al., “efficient priming of pcr with short oligonucleotides conjugated to a minor groove binder”,Nucleic Acids Research, Oxford University Press, Surrey, GB, vol. 25, No. 13, 1997, pp. 2657-2660 (XP002111427).
Afonina I. et al., “sequence-specific arrest of primer extension on single-stranded dnab an oligonucleotide-minor groove binder conjugate”,Proceedings of the National Academy of Sciences of USA, National Academy of Science. Washington, US, vol. 93, Apr. 1996, pp. 3199-3204 (XP000574996).
Afonina et al., “Efficient priming of PCR with short oligonucleotides conjugated to a minor groove binder.” Nucleic Acids Res. 25(13):2657-2660 (1997).
Afonina et al., “Sequence-specific arrest of primer extension on single-stranded DNA by an oligonulcleotide-minor groove binder conjugate.” Proc. Natl. Acad. Sci. USA, 93:3199-3204 (1996).
Agrawal et al., “Pharmacokinetics, biodistribution, and stability of oligodeoxynucleotide phosphorothioates in mice. ” Proc. Natl. Acad. Sci. USA, RR:7595-7599 (1991).
Animati et al., “Synthesis of two distamycin analogues and their binding mode to d(CGCAAATTTGCG)2 in the 2:1 solution complexes as determined by two dimensional H-NMR.” J. Med. Chem., 38:1140-1149 (1995).
Asseline et al., “Nucleic acid-binding molecules with high affinity and base sequence specificity: Interacting agents covalently to oligodeoxynucleotides.” Proc. Natl. Acad. Sci. USA, 81:3297-3301 (1994).
Atkinson T., and Smith M., “Solid-phase synthesis of oligodeoxyribonucleotides by the phosphite-triester method.” In:Oligonucleotide Synthesis, A Practical Approach, M.J. Gait (ed.), IRL Press, Oxford, UK, pp. 35-81 (1984).
Bailly et al., “DNA Recognition by intercalator-minor-groove binder hybrid molecules.”Bioconjugate Chem. 2(6):379-393 (1991).
Bailly et al., “DNA-binding properties of a distamycin-ellipticine hybrid molecule.” Mol. Pharmacol., 41:845-55 (1992).
Bailly et al., “The Different binding modes of Hoechst 33258 to DNA studied by electric linear dichroism.” Nucl. Acid Res., 21(6):3705-9 (1993).
Boger et al., “CC-1065 and the duocarmycins: Unraveling the keys to a new class of naturally derived DNA alkylating agents.” Proc. Natl. Acad. Sci. USA, 92:3642-3649 (1995).
Boger et al., “CC-1065 partial structures: enhancement of noncovalent affinity for DNA minor groove binding through introduction of stabilizing electrostatic interactions.” J. Org. Chem., 57:1277-1284 (1992).
Boger et al., “Studies on the total synthesis of CC-1065: preparation of a synthetic, simplified 3-carbamoyl-1,2-dihydro-3H-pyrrolo[3,2-e]indole dimer/trimer/tetramer (CDPI dimer/trimer/tetramer) and development of methodology for DEP-I dimer methyl ester Formation.” J. Org. Chem., 52:1521-1530 (1987).
Bolli et al., “Watson-Crick base-pairing properties of bicyclo-DNA.” Nucleic Acids Res., 24:4660-4667 (1996).
Bruice et al., “Rational design of substitued tripyrrole peptides that complex with DNA by both selective minor groove binding and electrostatic interaction with the phosphate backbone.” Proc. Natl., Acad. Sci. USA, 89:1700-4 (1992).
Caetano-Anolles et al., “DNA amplification fingerprinting using very short arbitrary oligonucleotide primers.” Biotechnology, 9:553-557 (1991).
Cardullo et al., “Detection of nucleic acid hybridization by nonradiative fluorescence resonance energy transfer.” Proc. Natl. Acad. Sci. USA, 85:8790-94 (1988).
Chen et al., “A new DNA minor groove binding motif: cross-linked lexitropsins.” J. Am Chem. Soc., 116:6995-7005 (1994).
Cosstick et al., “Synthesis of d(GC) and d(CG) octamers containing alternating phosphorothioate linkages: Effect of the phosphorothioate group on the B-Z transition.” Biochemistry, 24:3630-38 (1985).
Demidov et al., “Kinetics and mechanism of polyamide (“peptide”) nucleic acid binding to duplex DNA.” Proc. Natl. Acad. Sci. USA, 92:2637-41 (1995).
Dempcy et al., “Synthesis of a thymidyl pentamer of deoxyribonucleic guanidine and binding studies with DNA homopolynucleotides.” Proc. Natl. Acad. Sci. USA, 92:6097-101 (1995).
Dervan, “Design of sequence-specific DNA-binding molecules.” Science, 232-464-71 (1986).
Don et al., “‘Touchdown’ PCR to circumvent spurious priming during gene amplification.” Nucleic Acids Res., 19:4008 (1991).
Draper et al., “A method for linking fluorescent labels to polynucleotides: Application to studies of ribosome-ribonucleic acid interactions. ” Biochemistry, 19:1774-1781 (1980).
Eckstein et al., “Polyribonucleotides containing a phosphorothioate backbone. ” Eur. J. Biochem., 13:558-564 (1970).
Egholm, “Spectrometry senses more than a small difference.” Nature Biotech., 15:1346 (1997).
Fagan et al., “Cooperative binding of distamycin-A to DNA in the 2:1 mode.” J. Am Chem. Soc., 114:1080-1081 (1992).
Fodor et al., “Light-directed, spatially addressable parallel chemical synthesis.” Science, 251:767-773 (1991).
Freifelder, “Fluorescence Spectroscopy.” Physical Biochemistry, Second Edition, W.H. Freeman & Co., San Francisco, pp. 537-542 (1982).
Gamper et al., “Facile preparation of nuclease resistant 3' modified oligodeoxynuclcotides.” Nucleic Acids Res., 21(1):145-50 (1993).
Gibson K.J. and Benkovic, S.J., “Sy
Afonina Irina A.
Belousov Yevgeniy S.
Dempcy Robert O.
Kutyavin Igor V.
Lokhov Sergey G.
Epoch Biosciences, Inc.
Riley Jezia
Townsend and Townsend / and Crew LLP
LandOfFree
Real-time linear detection probes: sensitive 5'-minor groove... does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Real-time linear detection probes: sensitive 5'-minor groove..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Real-time linear detection probes: sensitive 5'-minor groove... will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-4126861