Polynucleotide associated with a colon cancer comprising...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

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C435S091100, C435S091200, C536S023100, C536S024300

Reexamination Certificate

active

07638274

ABSTRACT:
Provided is a polynucleotide including at least 10 contiguous nucleotides of a nucleotide sequence selected from the group consisting of nucleotide sequences of SEQ ID NOS: 1-12 and including a nucleotide at position 101 of the nucleotide sequence, or a complementary polynucleotide thereof.

REFERENCES:
patent: 2005/0228172 (2005-10-01), Wang
patent: 2003235576 (2003-08-01), None
Genbank GenBank Reference SNP rs11408214m, entry date Nov. 13, 2003 URL: http://www.ncbi.nlm.nih.gov/SNP/snp—ref.cgi?db=human—9606&na=1&gnl=gnl%7CdbSNP%7Crs11408214&RID=KVW71K0401R&QUERY—NUMBER=1.
Hirschhorn et al. Genetics in Medicine. vol. 4, No. 2, pp. 45-61, Mar. 2002.
Long, et al. BMC Genet. May 24, 2004;5:11.
Halushka, et al. Nature Genetics, 1999; 22:239-247.
DNA Polymorphism and Human Disease; J.F. Gusella; Ann. Rev. Biochem. 1986. 55:831-52.
Sequence-Selective Recognition of DNA by Strand Displacement with a Thymine-Substituted Polyamide; Peter E. Nielsen, Michael Egholm, Rolf H. Berg, Ole Buchardt; Science, vol. 254; Dec. 6, 1991; pp. 1497-1500.
The Ligation Amplification Reaction (LAR)-Amplification of Specific DNA Sequences Using Sequential Rounds of Template-Dependent Ligation; Dan Y. Wu, R. Bruce Wallace; Genomics 4, 560-569 (1989).
A Ligase-Mediated Gene Detection Technique; Ulf Landegren, Robert Kaiser, Jane Sanders, Leroy Hood; Aug. 26, 1988; Division of Biology, California Institute of Technology, Pasadena, CA 91125.
Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format; D.Y. Kwoh, G.R. Davis, K.M. Whitfield, H.L. Chappelle, L.J. DiMichele, T.R. Gingeras; Proc. Natl. Acad. Sci USA, vol. 86, pp. 1173-1177, Feb. 1989.
Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication; John C.Guatelli, Kristina M. Whitfield, Deborah Y. Kwoh, Kevin J. Barringer, Douglas D. Richman, Thomas R. Gingeras; Proc. Natl. Acad. Sci USA; vol. 87, pp. 1874-1878, Mar. 1990, Biochemistry.
Molecular Cloning; A Laboratory Manual; Second Edition; Sambrook, Fritsch, Maniatis, pp. 13.1-13.20.
“DNA Polymorphism and Human Diease”; Author: J.F. Gusella; Annu. Rev. Biochem,. vol. 55, pp. 831-854 (1986).
PCT International Search Report; International Application No. PCT/KR2005/000465; International filing date Feb. 19, 2005; Date of mailing: Jun. 29, 2005.
PCT Written Opinion for International Application No. PCT/KR2005/000465; International filing date Feb. 19, 2005; Date of Mailing: Jun. 29, 2005.
Haga, Hisanori et al., “Gene-based SNP discovery as part of the Japanese Millennium Genome Project: identification of 190562 genetic variations in the human genome,” JHum Genet (2002) 47: 605-610.
Kawakami, Kazuyuki and Watanabe, Go, “Identification and Functional Analysis of Single Nucleotide Polymorphism in the Tandem Repeat Sequence of Thymidylate Synthase Gene,” Cancer Research (2003) 63: 6004-6007.
Powell, Ned et al., “Single nucleotide polymorphism analysis in the human phosphatase PTPrj gene using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry,” Rapid Commun. Mass Spectrom/ (2004) 18: 2249-2254.
NCBI Single Nucleotide Polymorphism, Reference SNP Id: rs2295706, NCBI Assay Id: ss12673809 (Aug. 27, 2003).
Molecular Cloning; A Laboratory Manual; Second Edition; Sambrook, Fritsch, Maniatis, 1989.
XP002529404 retrieved from NCBI database accession no. rs2863383; (Oct. 10, 2003).
XP002529409 retrieved from NCBI database accession no. rs1485217; (Oct. 10, 2003).
XP002529410 retrieved from NCBI database accession no. rs1996489; (Nov. 22, 2003).
XP002529415 retrieved from NCBI database submitter method handle TSC-CSHL, (May 25, 2006).
International Search Report for PCT/KR2005000465.
XP002529405 retrieved from NCBI database accession no. rs7151139; (Jun. 30, 2003).
XP002529406 retrieved from NCBI database accession no. rs724454; (Jun. 9, 2000).
XP002529407 retrieved from NCBI database accession no. rs10142383; (Apr. 11, 2003).
XP002529408 retrieved from NCBI database accession no. rs1402026; (May 11, 2003).
XP002529411 retrieved from NCBI database accession no. rs2236261; (Oct. 10, 2003).
XP002529418 retrieved from NCBI database submitter method handle Perlegen, (May 25, 2006).
XP002529416 retrieved from NCBI database submitter method handle BCM—SSAHASNP, May 25, 2006).
XP002529417 retrieved from NCBI database submitter method handle WI—SSAHASNP, (May 25, 2006).
XP002529412 retrieved from NCBI database accession no. rs1340655; (Oct. 10, 2003).
XP002529413 retrieved from NCBI database accession no. rs1334856; (Oct. 19, 2000).
XP002529414 retrieved from NCBI database accession no. rs6573195; (Oct. 10, 2003).
Erichsen et al., “SNPs in cancer research and treatment,” British Journal of Cancer, vol. 90, No. 4, pp. 747-751, (Feb. 17, 2004).
Sihn et al., “CANu1, a novel nucleolar protein, accumulated on centromere in response to DNA damage,” Genes to Cells, vol. 13, No. 8, pp. 787-796, (Aug. 2008).
Twymann et al., “Techniques Patents for SNP Genotyping,” Pharmacogenomics, vol. 4, No. 1, pp. 67-69, (Jan. 01, 2003).

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