Method for HLA DP typing

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Patent

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

536 2431, 536 2433, C12Q 168, C07H 2104

Patent

active

055410650

ABSTRACT:
A process for determining the genotype of an individual with respect to the alleles at the HLA DP locus involves obtaining a sample of nucleic acid from the individual, and hybridizing the nucleic acids with a panel of probes specific for variant segments of DPalpha and DPbeta genes. Because the variation between DPbeta alleles is highly dispersed throughout the second exon of the DPbeta gene, the discovery of many different DPbeta alleles makes the process far more discriminating and informative than cellular, RFLP, or serological methods. The process can also be carried out on amplified nucleic acid produced by the polymerase chain reaction using primers specific for the second exon of the DPalpha and DPbeta genes. HLA DP DNA typing methods are useful in the prevention of graft rejection and host versus graft disease, in determining susceptibility to autoimmune diseases, in providing evidence concerning the derivation from an individual of forensic samples, and in paternity testing.

REFERENCES:
patent: 2683202 (1987-07-01), Mullis
patent: 4582788 (1986-04-01), Erlich
patent: 4683195 (1987-07-01), Mullis et al.
patent: 4889818 (1989-12-01), Gelfand et al.
patent: 5110920 (1992-05-01), Erlich
Wank et al., 1978, "The Lymphocyte Restimulation System: Evaluation by Intra-HLA-D Group Priming" Immunogenetics 6:107-115.
Mawas et al., 1980, "Split of HLA-D into Two Regions Alpha and Beta by a Recombination Between HLA-D and GLO. I. Study in a Family and Primed Lymphocyte Typing for Determinants Coded by the Beta Region" Tissue Antigens 15:458-466.
Shaw et al., 1980, "Evidence for a New Segregant Series of B-Cell Antigens that are Encoded in the HLA-D Region and that Stimulate Secondary Allogeneic Proliferative and Cytotoxic Responses" J. Experimental Medicine 152:565-580.
Kavathas et al., Oct., 1981, "SB: A New HLA-Linked Human Histocompatibility Gene Defined Using HLA-Mutant Cell Lines" Nature 293:747-749.
Shaw et al., 1982, "Serologic Identification of the Human Secondary B Cell Antigens" J. Experimental Medicine 156:731-743.
Wake et al., Nov., 1992, "Allelic Polymorphism and Complexity of the Genes for HLA-DR B-Chains-Direct Analysis by DNA-DNA Hybridization" Nature 300:372-374.
Bohme et al., Jan., 1983, "Human Class II Major Histocompatibility Antigen B-Chains are Derived From at Least Three Loci" Nature 301:82-84.
Choi et al., Jul., 1983, "Murine I-AB Chain Polymorphism: Nucleotide Sequences of Three Allelic I-AB Genes" Science 221:283-286.
Roux-Dosseto et al., "Genetic Mapping of a Human Class II Antigen B-Chain cDNA Clone to the SB Region of the HLA Complex" Proc. Natl. Acad. Sci. USA 80:6036-6040.
Kappes et al., 1984, "Structure and Polymorphism of the HIA Class II SB Light Chain Genes" The EMBO Journal 3(12):2985-2993.
Gorski et al., Jul., 1984, "Molecular Organization of the HLA-SB Region of the Human Major Histocompatibility Complex and Evidence for Two SB B-Chain Genes" Proc. Natl. Acad. Sci. USA 81:3934-3938.
Gutafsson et al., May, 1984, "Isolation of a cDNA Clone Coding for an SB B-Chain" Nature 309:76-78.
Servenius et al., 1984, "Molecular Map of the Human HLA-SB (HLA-DP) Region and Sequence of an SBalpha (DPalpha) Pseudogene" The EMBO Journal 3(13):3209-3214.
Spielman et al., Jun., 1984, "Six HLA-D Region Alpha-Chain Genes on Human Chromosome 6: Polymorphisms and Associations of DC Alpha-Related Sequences With DR Types" Proc. Natl. Acad. Sci. USA 81:3461-3465.
Giles and Capra, 1985, "Structure, Function, and Genetics of Human Class II Molecules" Advances Immunology 37:1-71.
Kelly and Trowsdale, Nov., 1985, "Complete Nucleotide Sequence of a Functional HLA-DPBeta Gene and the Region Between the DPBetal and DPalphal Genes: Comparison of the 5'Ends of HLA Class II Gene" Nucleic Acids Research 13(5):1607-1621.
Trowsdale et al., 1985, "Structure, Sequence and Polymorphism in the HLA-D Region" Immunological Reviews 85:5-43.
Ando et al., 1986, "Isolation and Allelic Polymorphism of cDNA Clones and Genomic Clones of HLA-DP Heavy and Light Chains" Human Immunology 17:355-367.
Hoffman et al., 1986, "HLA-DP Antigens in Patients With Pauciarticular Juvenile Rheumatoid Arthritis" Arthritis and Rheumatisim 29(9):1057-1062.
Odum et al., 1986, "Increased Frequency of HLA-DPw2 in Pauciarticular Onset Juvenile Chronic Arthritis" Tissue Antigens 28:245-250.
Saiki et al., Nov., 1986, "Analysis of Enzymatically Amplified B-Globin and HLA-DQalpha DNA With Allele-Specific Oligonucleotide Probes" Nature 324(13):163-166.
Scharf et al., 1986, "Direct Cloning and Sequence Analysis of Enzymatically Amplified Genomic Sequences" Science 233:1076-1078.
Silver and Goyert, HLA Class II Antigens, Springer-Verlag, 1986, pp. 32-48 entitled "Epitopes are the functional Units of HLA Class II Molecules and Form the Molecular Basis for Disease Susceptibility".
Amar et al., Mar. 1987, "HLA-DP and HLA-DO Genes in Presumptive HLA-Identical Siblings: Structural and Functional Indentification of Allelic Variation" J. Immunology 138(6):1947-1953.
Bodmer et al., Jul., 1987, "Identification of HLA-DP Polymorphism With DPalpha and DPbeta Probes and Monoclonal Antibodies: Correlation With Primed Lymophocyte Typing" Proc. Natl. Acad. Sci. USA 84:4596-4600.
Gustafsson et al., Jun., 1987, "Class II Genes of the Human Major Histocompatibility Complex" J. Biological Chemistry 262(8):8778-8786.
Hyldig-Nielsen et al., Mar., 1987, "Restriction Fragment Length Polymorphism of the HLA-DP Subregion and Correlations to HLA-DP Phenotypes" Proc. Natl. Acad. Sci. USA 84:1644-1648.
Lotteau et al., 1987, "Biochemical Polymorphism of the HLA-DP Heavy Chain" Immunogenetics 25:403-407.
Odum et al., 1987, "A `New` Supertypic HLA-DP Related Determinant Detected by Primed Lymphocyte Typing (PLT)" Tissue Antigens 29:101-109.
Begovich et al., 1988, "The Use of the Polymerase Chain Reaction to Analyze HLA Class II Sequence Polymorphism and Genetic Sysceptibility to Myasthenia Gravis" 23(2):81.
Bugawan et al., 1988, "The Use of Non-Radioactive Oligonucleotide Probes to Analyze Enzymatically Amplified DNA for Prenatal Diagnosis and Forensic HLA Typing" Bio/Technology 6:943-947.
Bugawan et al., 1988, "Analysis of HLA-DP Allelic Sequence Polymorphism Using the in Vitro Enzymatic NDA Amplification of DP-alpha and DP-beta Loci" J. Immunology 141(12):4024-4030.
Compagnone-Post, 1988, "The Beta-Chains of DP4 Molecules From Different Haplotypes are Encoded by the Same Gene" Genomics 2:8-13.
Horn et al., Aug. 1988, "Allelic Sequence Variation of the HLA-DQ Loci: Relationship to Serology and to Insulin-Dependent Diabetes Susceptibility" Proc. Natl. Acad. Sci. USA 85:6012-6016.
Howell et al., Jan., 1988, "An Extended HLA-D Region Haplotype Associated With Celiac Disease" Proc. Natl. Acad. Sci. USA 85:222-226.
Kappes and Strominger, 1988, "Human Class II Major Histocompatibility Complex Genes and Proteins" Ann. Rev. Biochem. 57:991-1028.
Maeda et al., 1988, "HLA-DP Typing by Analysis of DNA Restriction Fragment Length Polymorphisms in the HLA-DPbeta Subregion" 3-Biochem. Genetics 109:1782 (Abstract No. 1766k).
Maeda et al., 1988, "HLA-DP Typing by Analysis of DNA Restriction Fragment Length Polymorphisms in the HLA-DPbeta Subregion" Human Immunology 21:239-248.
Odum et al., 1988, "HLA-DP Antigens are Involved in the Susceptibility to Multiple Sclerosis" Tissue Antigens 31:235-237.
Scharf et al., 1988, "New Methodology for HLA Class II Oligonucleotide Typing Using Polymerase Chain Reaction" Human Immunology 23(2):143.
Scharf et al., May, 1988, "HLA Class II Allelic Variation and Susceptibility to Pemphigus Vulgaris" Proc. Natl. Acad. Sci. USA 85:3504-3508.
Angelini et al., 1989, "HLA-DP Typing by DNA Amplification and Hybridization With Specific Oligonucleotides" Human Immunology 26:169-177.
Begovich et al., Dec., 1989, "A Specific HLA-DPbeta Allele is Associated With Pauciarticular Juvenile Rheumatoid Arthritis but not Adult Rheumatoid Arthritis" Proc. Natl. Acad. Sci. USA 86:9489-9493.
Bugawan et al., Jun. 1989, "A Combination of a Particular HLA-DPbeta Allele and an HLA-DQ Heterodimer Confers Susceptibility to Coeliac Disease" Nature 339:470-473.
Lee e

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Method for HLA DP typing does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Method for HLA DP typing, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Method for HLA DP typing will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-1657692

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.