Gene expression profiles that identify genetically elite cattle

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

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C435S007100, C536S023100, C536S023500

Reexamination Certificate

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07638275

ABSTRACT:
Genetically elite ungulate mammals are identified on the basis of gene expression profiles from biological samples such as liver and blood. Methods and compositions are presented to select genetically elite animals with a desired phenotype such as high milk production for breeding to improve production levels. A method to select an animal with a specific phenotype, e.g. milk production and health traits, includes creating a Gene Expression Index for a specific phenotype and using the index to identify candidate animals for breeding by comparing the index to gene expression profiles of the animals.

REFERENCES:
patent: 5041371 (1991-08-01), Cowan et al.
patent: 5374523 (1994-12-01), Collier et al.
patent: 5614364 (1997-03-01), Tuggle et al.
patent: 5645834 (1997-07-01), Cockrum et al.
patent: 5767080 (1998-06-01), Beck et al.
patent: 5850804 (1998-12-01), Hill et al.
patent: 5939264 (1999-08-01), Rothschild et al.
patent: 5981187 (1999-11-01), Cook et al.
patent: 6013857 (2000-01-01), Deboer et al.
patent: 6017563 (2000-01-01), Knight et al.
patent: 6183786 (2001-02-01), Knight et al.
patent: 6319525 (2001-11-01), Knight et al.
patent: 6492142 (2002-12-01), Renaville et al.
patent: 6548740 (2003-04-01), Bremel et al.
patent: 2001/0053849 (2001-12-01), Kreek et al.
patent: 2002/0058085 (2002-05-01), Knight et al.
patent: 2002/0124803 (2002-09-01), Chen et al.
patent: 2002/0169302 (2002-11-01), Havukkala et al.
patent: WO 01/49879 (2001-07-01), None
patent: WO 02/36824 (2002-05-01), None
Coleman et al. Drug Discovery Today. 2003. 8: 233-235.
Liu et al. Clinical Immunology. 2004. 112: 225-230.
Singh et al. Proceedings of the New Zealand Society of Animal Production. 2004. 64: 8-10.
Ashburner et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.Nature Genetics25(1):25-9.
Band et al., (2002) A 3800 gene microarray for cattle functional genomics: comparison of gene expression in spleen, placenta, and brain.Anim Biotechnol. 13(1):163-72.
Benjamini, Y. and Hochberg, Y. (1995), “Controlling the False Discovery Rate: a practical and powerful approach to multiple testing,”Journal of the Royal Statistical Society. B, 57, 289 -300.
Brown and Botstein (1999) Exploring the new world of the genome with DNA microarrays.Nature Genetics21, 33-37.
Diehl et al., (2000) Manufacturing DNA microarrays of high spot homogeneity and reduced background signal.Nucleic Acids Research29(7).
Eisen et al. (1998) Cluster analysis and display of genome—wide expression patters. PNAS (USA) 95: 14863-14868.
Hegde et al. (2000) A concise guide to cDNA microarray analysis.Biotechniques29(3):548-50.
Huang and Madan (1999) CAP3: A DNA sequence assembly program.Genome Research9(9):868-77.
Rosenwald A, et al. (2002) The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. N Engl J Med. 346(25):1937-47.
Rosenwald and Staudt (2002) Clinical translation of gene expression profiling in lymphomas and leukemias. Semin Oncol. 29(3):258-63.
Smith and Green (1999) (Unpublished) Repeatmasker, http://ftp.genome.washington.edu/RM/RepeatMasker.html.
Cox et al., (2002) Identification of candidate genes regulating HDL cholesterol using a chromosomal region expression array. Genome Res. 12(11):1693-702.
Yao, J. et al. (2001) Generation of EST and cDNA microarray resources for the study of bovine immunobiology.Acta Vet. Scand. 42(3): 391-405.
Wayne et al., (2002) Combining mapping and arraying: An approach to candidate gene identification. Proc Natl Acad Sci U S A. 99(23):14903-6.
Burton et al., “An Immunogenomics Approach to Understanding Periparturient Immunosuppression and Mastitis Susceptibility in Dairy Cows,”Acta vet. scand. (suppl.), 98: 71-88 (2003).
Ishiwata et al., “Characterization of Gene Expression Profiles in Early Bovine Pregnancy Using a Custom cDNA Microarray,”Mol. Reprod. and Dev., 65: 9-18 (2003).

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