Apparatus, method, and product of manufacture for...

Electrical computers and digital data processing systems: input/ – Input/output data processing – Input/output access regulation

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C706S045000

Reexamination Certificate

active

07613851

ABSTRACT:
Techniques for reconstructing networks are provided. In one aspect, a method for reconstructing a synthetic network, such as a synthetic biological network, is provided. In another aspect, a method for reconstructing a supply chain network is provided. Exemplary supply chain networks include supply chains for petroleum distribution.

REFERENCES:
patent: 5933416 (1999-08-01), Schenkel et al.
patent: 6112192 (2000-08-01), Capek
patent: 6983227 (2006-01-01), Thalhammer-Reyero
patent: 2004/0053227 (2004-03-01), Chou
Trey E. Ideker et al., Discovery of Regulatory Interactions through Perturbations: Inference and Experimental Design, 2000, University of Washington, 12 pages.
Andreas Wagner, Estimating Coarse Gene Network Structure from Large-Scale Gene Perturbation Data, 2002, Grnome Research, vol. 12, 309-315.
Tatsuya Akutsu et al., Algoritnms for Inferring Qualitative Models of Biological Networks, 2000, Proc. Pacific Symposium on Biocomputing, 290-301.
Michael Samoilov et al., On the Deduction of Chemical Reaction Pathways from Measurements of Time Series of Concentrations, 2001, CHAOS, vol. 11, No. 1, 108-114.
Patrik D'Haeseleer et al., Genetic Network Inference: From Co-Expression Clustering to Reverse Engineering, 2000, Bioinformatics, vol. 16, No. 8, 707-726.
Fiete, et al, Model of Birdsong Learning Based on Gradient Estimation by Dynamic Perturbation of Neural Conductances, J Neurophysiol 98: pp. 2038-2057, 2007.
Anatal, et al., Perturbation Waves in Proteins and Protein Networks: Applications of Percolation and Game Theories in Signaling and Drug Design, Current Protein and Peptide Science (2009) 10, pp. 161-172.
Akutsu et al., Algorithms for Inferring Qualitative Models of Biological Networks, Proc. Pacific Symposium on Biocomputing 2000 (PSB'2000), pp. 290-301 (2000).
Friedman et al., Using Bayesian Networks to Analyze Expression Data, Journal of Computational Biology, vol. 7, Nos. 3/4, pp. 601-620 (2000).
Hartemink et al., Using Graphical Models and Genomic Expression Data to Statistically Validate Models of Genetic Regulatory Networks, Pacific Symposium on Biocomputing 2001, Hawaii, Jan. 2001.
D'Haeseleer et al., Genetic Network Inference: From Co-Expression Clustering to Reverse Engineering, Bioinformatics, vol. 16, No. 8 pp. 707-726 (2000).
Samoilov et al., On the Deduction of Chemical Reaction Pathways from Measurements of Time Series of Concentrations, CHAOS, vol. 11, No. 1, pp. 108-114 (20001).
Arkin et al., A Test Case of Correlation Metric Construction of a Reaction Pathway from Measurements, Science, vol. 227, No. 29, pp. 1275-1279 (1997).
Arkin et al., Statistical Construction of Chemical Reaction Mechanisms from Measured Time-Series, J. Phys. Chem., vol. 99, pp. 970-79 (1995).
Wagner, Estimating Coarse Gene Network Structure from Large-Scale Gene Perturbation Data, Genome Research, vol. 12, pp. 309-315 (2002).
Butte et al., Discovering Functional Relationships between RNA Expression and Chermotherapeutic Susceptibility Using Relevance Networks, PNAS, vol. 99, No. 9, pp. 12182-12186 (2000).
Yeung et al., Reverse Engineering Gene Networks Using Singular Value Decomposition and Robust Regression, PNAS vol. 99, No. 9 pp. 6163-6168 (2002).
Ronen et al., Assignment Numbers to the Arrows: Parameterizing a Gene Regulation Network by Using Accurate Expression Kinetics, PNAS, vol. 99, No. 16, pp. 10555-10560 (2002).
Vance et al., Determination of Casual Connectivities of Species in Reaction Networks, PNAS, vol. 99, No. 9, pp. 5816-5821 (2002).

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Apparatus, method, and product of manufacture for... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Apparatus, method, and product of manufacture for..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Apparatus, method, and product of manufacture for... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-4078275

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.