Apparatus for generating a constraint condition in a molecular d

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364578, G06F 1750

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054484987

ABSTRACT:
A constraint condition generating apparatus generates a constraint condition which should be output to a molecular dynamics simulator for simulating a behavior of a molecule based on a molecular dynamics method under the constraint condition for freezing a part of the degree of freedom within the molecule. This apparatus comprises bond constraint condition setting and releasing unit for setting a bond constraint list comprising the number of two atoms whose bond are to be constrained and a bonding distance between two atoms, and for releasing the constraint of the bond of two atoms, angle constraint condition setting and releasing means for setting an angle constraint condition including a bonding distance between two atoms which are not common and for releasing a part of angle constraint condition in accordance with a designation by a user; and a torsion constraint condition setting and releasing unit for setting a torsion constraint condition including a bonding distance between two atoms which are not common, and for releasing a part of a constraint condition in accordance with a designation by a user.

REFERENCES:
patent: 5241470 (1993-08-01), Lee et al.
patent: 5260882 (1993-11-01), Blanco et al.
IBM Systems Journal, vol. 28, No. 4, 1989, Armonk, N.Y. "Designing Molecules and Crystals by Computer", A. Koide, pp. 613-627.
Witten; "Computation Medicine, Frankenstein in the Machines"; IEEE 1991.
Weiner; "Parallel Processing and Computational Chemistry. " IEEE 1989.

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