Methods for assaying a sample for an aggregant

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

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C435S007100

Reexamination Certificate

active

07666594

ABSTRACT:
This invention relates to an aggregation sensor useful for the detection and analysis of aggregants in a sample, and methods, articles and compositions relating to such a sensor. The sensor comprises first and second optically active units, where energy may be transferred from an excited state of the first optically active unit to the second optically active unit. The second optically active unit is present in a lesser amount, but its relative concentration is increased upon aggregation, increasing its absorption of energy from the first optically active units. This increase in energy transfer can be detected in variety of formats to produce an aggregation sensing system for various aggregants, including for quantitation. Other variations of the inventions are described further herein.

REFERENCES:
patent: 4948843 (1990-08-01), Roberts et al.
patent: 4950587 (1990-08-01), Roberts et al.
patent: 5408109 (1995-04-01), Heeger et al.
patent: 5612221 (1997-03-01), Simons et al.
patent: 5869350 (1999-02-01), Heeger et al.
patent: 5881083 (1999-03-01), Diaz-Garcia et al.
patent: 5968762 (1999-10-01), Jadamec et al.
patent: 5990479 (1999-11-01), Weiss et al.
patent: 6090552 (2000-07-01), Nazarenko et al.
patent: 6263286 (2001-07-01), Gilmanshin et al.
patent: 6280933 (2001-08-01), Glazer et al.
patent: 6350431 (2002-02-01), Snow et al.
patent: 6534329 (2003-03-01), Heeger et al.
patent: 6545164 (2003-04-01), Waggoner et al.
patent: 6579726 (2003-06-01), Natan et al.
patent: 6589731 (2003-07-01), Chen et al.
patent: 6743640 (2004-06-01), Whitten
patent: 6951682 (2005-10-01), Zebala
patent: 6979543 (2005-12-01), Chen et al.
patent: 7122383 (2006-10-01), Jones et al.
patent: 7141437 (2006-11-01), Dvornic et al.
patent: 7208122 (2007-04-01), Swager et al.
patent: 7214489 (2007-05-01), Bazan et al.
patent: 7270956 (2007-09-01), Bazan et al.
patent: 2001/0026921 (2001-10-01), Rabbani et al.
patent: 2002/0009728 (2002-01-01), Bittner
patent: 2002/0034747 (2002-03-01), Bruchez
patent: 2002/0150759 (2002-10-01), Jones
patent: 2002/0177136 (2002-11-01), McBranch
patent: 2003/0054413 (2003-03-01), Kumaraswamy
patent: 2003/0087311 (2003-05-01), Wolf
patent: 2004/0009506 (2004-01-01), Stephan et al.
patent: 2004/0023248 (2004-02-01), O'Malley
patent: 2004/0023317 (2004-02-01), Motamedi et al.
patent: 2004/0241768 (2004-12-01), Whitten
patent: 2005/0003386 (2005-01-01), Bazan et al.
patent: 2005/0064239 (2005-03-01), Takei
patent: 2005/0064604 (2005-03-01), Bohmann et al.
patent: 2005/0196775 (2005-09-01), Swager et al.
patent: 2006/0073607 (2006-04-01), Rose et al.
patent: 2006/0127929 (2006-06-01), Swager
patent: 2006/0175193 (2006-08-01), Inganas et al.
patent: 2006/0183140 (2006-08-01), Bazan et al.
patent: 2006/0216734 (2006-09-01), Bazan et al.
patent: 2006/0216759 (2006-09-01), Naasani
patent: 2007/0178470 (2007-08-01), Bissonnette et al.
patent: 2008/0038751 (2008-02-01), Asberg et al.
patent: 0708837 (1996-05-01), None
patent: 1279023 (2003-01-01), None
patent: 1281744 (2003-02-01), None
patent: 0990903 (2003-03-01), None
patent: 0684239 (2003-12-01), None
patent: WO 99/35288 (1999-07-01), None
patent: WO 99/35288 (1999-07-01), None
patent: WO 00/14278 (2000-03-01), None
patent: WO 00/14278 (2000-03-01), None
patent: WO 00/66790 (2000-11-01), None
patent: WO 00/66790 (2000-11-01), None
patent: WO 01/01144 (2001-01-01), None
patent: WO 01/95059 (2001-12-01), None
patent: WO 02/081735 (2002-10-01), None
patent: WO 02/081735 (2002-10-01), None
patent: WO 02/084271 (2002-10-01), None
patent: WO 2004/001379 (2003-12-01), None
patent: WO 2004/001379 (2003-12-01), None
patent: WO 2004/037886 (2004-05-01), None
patent: WO 2004/077014 (2004-09-01), None
patent: WO 2005/056628 (2005-06-01), None
patent: WO 2006/092063 (2006-09-01), None
patent: WO 2007/001438 (2007-01-01), None
Balakin, K.V. et al. Conjugates of oligonucleotides with polyaromatic fluorophores as promising DNA probes1;Biosensors and Bioelectronics(1998) 13:771-778.
Bardea, A. et al. Sensing and amplification of oligonucleotide-DNA interactions by means of impedance spectroscopy: a route to a Tay-sachs sensor;Chem. Commun. (1999) 21-22.
Baur, J.W., et al. Thin-Film Light-Emitting Devices Based on Sequentially Adsorbed Multilayers of Water-Soluble Poly (ρ-phenylene)s;Advanced Materials(1998) 10:17:1452-1455.
Behr, J.P. Synthetic Gene-Transfer Vectors;Acc. Chem. Res. (1993) 26: 274-278.
Behr, J.P. DNA Strongly Binds to Micelles and Vesicles Containing Lipopolyamines or Lipointercalants;Tetrahedron Lett. (1986) 27:48:5861-5864.
Benson, S.C. et al. Heterodimeric DNA-binding dyes designed for energy transfer: synthesis and spectroscopic properties;Nucleic Acids Res. (1993) 21:24:5727-5735.
Betts, L., et al. A Nucleic Acid Triple Helix Formed by a Peptide Nucleic Acid-DNA Complex;Science(1995) 270: 1838-1841.
Bhattacharya, S. and Mandal, S.S. Interaction of surfactants with DNA. Role of hydrophobicity and surface charge on intercalation and DNA melting;Biochim.et Biophys. Acta. (1997) 1323:29-44.
Bhattacharya, S. and Mandal, S.S. Role of hydrophobic effect and surface charge in surfactant-DNA association;Indian J. Biochem. &Biophys. (1997) 34:11-17.
Bier, F.F. and Kleinjung, F. Feature-size limitations of microarray technology—a critical review;Fresenius J. Anal. Chem. (2001) 371:151-156.
Birnboim, H.C. and Jevcak, J.J. Fluorometric Method for Rapid Detection of DNA Strand Breaks in Human White Blood Cells Produced by Low Doses of Radiation;Cancer Res. (1981) 41:1889-1892.
Blessing, T. et al. Monomolecular collapse of plasmid DNA into stable virus-like particles;Proc. Natl. Acad. Sci. USA(1998) 95:1427-1431.
Bronich, T.K. et al. Recognition of DNA Topology in Reactions between Plasmid DNA and Cationic Copolymers;J. Am. Chem. Soc. (2000) 122:35:8339-8343.
Cardullo, R.A. et al. Detection of nucleic acid hybridization by nonradiative fluorescence resonance energy transfer;Proc. Natl. Acad. Sci. USA(1988) 85:8790-8794.
Castro, A. and Williams, J.G.K. Single-molecule detection of specific nucleic acid sequences in unamplified genomic DNA;Anal. Chem. (1997) 69:19:3915-3920.
Chandar, P. et al. Fluorescence probe investigation of anionic polymer-cationic surfactant interactions;Macromolecules(1988) 21:950-953.
Chehab, F.F. and Kan, Y.W. Detection of specific DNA sequences by fluorescence amplification: A color complementation assay;Proc. Natl. Acad. Sci. USA(1989) 86:9178-9182.
Chen, L. and Frankel, A.D. A peptide interaction in the major groove of RNA resembles protein interactions in the minor groove of DNA;Proc. Natl. Acad. Sci. USA. (1995) 92:5077-5081.
Chen, L. et al. Highly sensitive biological and chemical sensors based on reversible fluorescence quenching in a conjugated polymer;Proc. Natl. Acad. Sci. USA. (1999) 96:22:12287-12292.
Chen, W. et al. Using Ethidium Bromide to Probe the Interactions between DNA and Dendrimers;Langmuir(2000) 16:15-19.
Delling, U. et al. The number of positively charged amino acids in the basic domain of Tat is critical for trans-activation and complex formation with TAR RNA;Proc. Natl. Acad. Sci. USA(1991) 88:6234-6238.
Demidov, V.V. PNA and LNA throw light on DNA;Trends in Biotechnology(2003) 21:1:4-7.
Demidov, V.V. et al. Stability of peptide nucleic acids in human serum and cellular extracts;Biochem. Pharmacol. (1994) 48:6:1310-1313.
Didenko, V.V. DNA Probes Using Fluorescence Resonance Energy Transfer (FRET): Designs and Applications;Bio Techniques(2001) 31:5:1106-1121.
Dogariu, A. et al. Time-resolved Förster energy transfer in polymer blends;Synthetic Metals(1999) 100:95-100.
Dufourcq, J. et al. Molecular assembling of DNA with amphipathic peptides;FEBS Lett. (1998) 421:7-11.
Eastman, S.J. et al. Biophysical characterization of cationic lipid: DNA complexes;Biochim. et Biophys. Acta(1997) 1325:41-62.
Egholm, M. et al. PNA hybridizes to complementary oligonucleotides obeying the Watson-Crick hydrogenbonding rules;Nature(1993) 365:566-568.
Egholm, M. et al. Recognition of Guanine and Adenine in DNA by Cytosine and Thymine Containing Peptide Nucleic Acids (PNA);J. Am. Chem. Soc. (1992)

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