Method for bisulfite treatment

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C435S091400

Reexamination Certificate

active

07413855

ABSTRACT:
The present application is directed to a method for performing a bisulfite reaction to determine methylation positions in a nucleic acid, i.e. methylated and non-methylated cytosines, whereby the nucleic acid is incubated in a solution comprising the nucleic acid for a time period of 1.5 to 3.5 hours at a temperature between 70 and 90° C., whereby the concentration of bisulfite in the solution is between 3 M and 6.25 M and whereby the pH value of the solution is between 5.0 and 6.0 whereby the nucleic acid, i.e. the cytosine bases in the nucleic acid, are deaminated. Then the solution comprising the deaminated nucleic acid is desulfonated and preferably desalted. The application is further related to a solution comprising bisulfite with a certain pH and uses thereof as well as a kit comprising the solution.

REFERENCES:
patent: 4683202 (1987-07-01), Mullis et al.
patent: 5130238 (1992-07-01), Malek et al.
patent: 5137806 (1992-08-01), LeMaistre et al.
patent: 5210015 (1993-05-01), Gelfand et al.
patent: 5234809 (1993-08-01), Boom et al.
patent: 5487972 (1996-01-01), Gelfand et al.
patent: 5552277 (1996-09-01), Nelson et al.
patent: 5595890 (1997-01-01), Newton et al.
patent: 5639611 (1997-06-01), Wallace et al.
patent: 5786146 (1998-07-01), Herman et al.
patent: 5804375 (1998-09-01), Gelfand et al.
patent: 6174670 (2001-01-01), Wittwer et al.
patent: 6331393 (2001-12-01), Laird et al.
patent: 0 200 362 (1986-12-01), None
patent: 0 201 184 (1986-12-01), None
patent: 0 389 063 (1990-09-01), None
patent: 0 439 182 (1991-07-01), None
patent: 1 394 172 (2004-03-01), None
patent: WO 90/01069 (1990-02-01), None
patent: WO 92/008800 (1992-01-01), None
patent: WO 92/02638 (1992-02-01), None
patent: WO 96/41811 (1996-12-01), None
patent: WO 99/16781 (1999-04-01), None
patent: WO 99/40098 (1999-08-01), None
patent: WO 00/32762 (2000-06-01), None
patent: WO 00/37291 (2000-06-01), None
patent: WO 01/37291 (2001-05-01), None
patent: WO 01/98528 (2001-12-01), None
patent: WO 02/31186 (2002-04-01), None
Abramson, R., et al., 1993, “Nucleic acid amplification technologies”,Current Opinion in Biotechnology, 4:41-47.
Alderton, R., et al., 1992, “Magnetic Bead Purification of M13 DNA Sequencing Templates”,Analytical Biochemistry, 201:166-169.
Ausubel F., et al., 2001, “Current Protocols In Molecular Biology”,John Wiley&Sons, Inc., Supplement 55-56:1-10.
Barany, F., 1991, “The Ligase chain Reaction in a PCR World”,PCR Methods and Applications, 5-16.
Barany, F., 1991, “Genetic disease detection and DNA amplification using cloned thermostable ligase”,Proc. Natl. Acad. Sci. USA, 88:189-193.
Benyajati, C., et al., “Alcohol dehydrogenase in Drosophila: isolation and characterization of messenger RNA and eDNA clone”,Nucleic Acids Research, 8:5649-5667.
Clark, S., et al., 1994, “High sensitivity mapping of methylated cytosines”,Nucleic Acids Research, 22(15):2990-2997.
Feil, R., et al., 1994, “Methylation analysis on individual chromosomes: improved protocol for bisulphate genomic sequencing”,Oxford University Press, 22(4):695-696.
Frommer, M., 1992, “A genomic sequencing protocol that yields a positive display of 5-methylcytosine risidues in individual DNA strands”,Proc. Natl. Sci. USA, 89:1827-1831.
Grigg, G., et al., 1994, “Sequencing 5-Methylcytosine Residues in Genomic DNA”,BioEssays, 16(6):431436.
Grigg, G., 1996, “Sequencing 5-methylcytosine residues by the bisulphate method”,The Journal of Seq.&Mapping6:189-198.
Grunau, C., et al., 2001, “Bisulfite genomic sequencing: systematic investigation of critical experimental parameters”,Nucleic Acids Research, 29 (13e65):1-7.
Guatelli, J., et al., 1990, “Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication”,Proc. Natl. Acad. Sci. USA, 87:1874-1878.
Hayatsu, H., et al., 1970, “The Addition of Sodium Bisulfite to Uracil and the Cytosine”,Journal of the American Chemical Society, 92 (3):724-726.
Hayatsu, H., et al., 1970, “Reaction of Sodium Bisulfite with Uricil, Cytosine, and their Derivatives”,Biochemistry9 (14): 2858-2864.
Komlyama, M., et al., 1994, “Catalysis of Diethylenetriamine for Bisulfite-Induced Deamination of Cytosine in Oligodeoxyribonucleotides”,Tetrahedron Letters, 35(44):8185-8188.
Kubareva, E., et al., 2002, Determination of Methylation Site of DNA-MethyltransferasenlaX by a Hybrid Method',BioTechniques33:526-531.
Kwoh, D., et al., 1989, “Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format”,Proc. Natl. Acad. Sci. USA, 86:1173-1177.
Oakeley, E., 1999, “DNA methylation analysis: a review of current methologies”,Pharmacology&Therapeutics, 84:389-400.
Olek, A., et al., 1996, “A modified and improved method for bisulphate based cytosine methylation analysis”,Nucleic Acids Research, 24(24):5064-5066.
Paulin, R., et al., 1998, “Urea improves efficiency of bisulphate-mediated sequencing of 5′-methylcytosine in genomic DNA”,Nucleic Acids Research, 26(21):5009-5010.
Raizis, A., et al., 1995, “A Bisulfite method of 5-Methylcytosine Mapping That Minimizes Template Degradation”,Analytical Biochemistry, 226:161-166.
Sabban, E., et al., 1982, The Effect of Bisulfite-induced C→U Transitions on Aminoacylation ofEscherichia coliGlycine tRNA',The Journal of Biological Chemistry, 257 (9) 4796-4805.
Slae, S, et al., 1978, “Deamination of Cytidine by Bisulfite: Mechanism at Neutral pH”,J Org Chem., 43(21):497-4200
Whelen, A., et al., 1996, “The Role of Nucleic Acid Amplification and Detection in the Clinical Microbiology Laboratory”,Annu. Rev. Microbid, 50:349-379.
Wu, D., et al., 1989, The Ligation Amplification Reaction (LAR)—Amplification of Specific DNA Sequences Using Sequential Rounds of Template-Dependent Ligation.

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Method for bisulfite treatment does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Method for bisulfite treatment, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Method for bisulfite treatment will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-3999675

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.