Methods of populating data structures for use in...

Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical

Reexamination Certificate

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C435S006120

Reexamination Certificate

active

11210239

ABSTRACT:
In particular, this invention provides novel methods of populating data structures for use in evolutionary modeling. In particular, this invention provides methods of populating a data structure with a plurality of character strings. The methods involve encoding two or more a biological molecules into character strings to provide a collection of two or more different initial character strings; selecting at least two substrings from the pool of character strings; concatenating the substrings to form one or more product strings about the same length as one or more of the initial character strings; adding the product strings to a collection of strings; and optionally repeating this process using one or more of the product strings as an initial string in the collection of initial character strings.

REFERENCES:
patent: 4959312 (1990-09-01), Sirokin
patent: 4994379 (1991-02-01), Chang
patent: 5023171 (1991-06-01), Ho et al.
patent: 5043272 (1991-08-01), Hartly et al.
patent: 5066584 (1991-11-01), Gyllensten et al.
patent: 5264563 (1993-11-01), Huse
patent: 5319308 (1994-06-01), Dechene
patent: 5408181 (1995-04-01), Dechene
patent: 5447839 (1995-09-01), Manos et al.
patent: 5506793 (1996-04-01), Stemmer
patent: 5512463 (1996-04-01), Stemmer
patent: 5514588 (1996-05-01), Varadaraj et al.
patent: 5519319 (1996-05-01), Smith
patent: 5521077 (1996-05-01), Kholsa et al.
patent: 5565350 (1996-10-01), Kmiec
patent: 5580730 (1996-12-01), Okamoto
patent: 5603793 (1997-02-01), Yoshida et al.
patent: 5605793 (1997-02-01), Stemmer
patent: 5612205 (1997-03-01), Kay et al.
patent: 5650722 (1997-07-01), Smith
patent: 5675253 (1997-10-01), Smith
patent: 5717085 (1998-02-01), Little et al.
patent: 5760012 (1998-06-01), Kmiec et al.
patent: 5763239 (1998-06-01), Short et al.
patent: 5789228 (1998-08-01), Lam et al.
patent: 5789577 (1998-08-01), Geysen
patent: 5811238 (1998-09-01), Stemmer et al.
patent: 5814473 (1998-09-01), Warren et al.
patent: 5824469 (1998-10-01), Horwitz et al.
patent: 5830696 (1998-11-01), Short
patent: 5830721 (1998-11-01), Stemmer et al.
patent: 5834252 (1998-11-01), Stemmer et al.
patent: 5837458 (1998-11-01), Minshull et al.
patent: 5866363 (1999-02-01), Pieczenik
patent: 5869644 (1999-02-01), Shortle et al.
patent: 5876997 (1999-03-01), Kretz
patent: 5912119 (1999-06-01), Radman et al.
patent: 5925749 (1999-07-01), Mathur et al.
patent: 5928905 (1999-07-01), Stemmer et al.
patent: 5939250 (1999-08-01), Short
patent: 5939300 (1999-08-01), Robertson et al.
patent: 5942430 (1999-08-01), Robertson et al.
patent: 5948666 (1999-09-01), Callen et al.
patent: 5958672 (1999-09-01), Short
patent: 5958751 (1999-09-01), Murphy et al.
patent: 5962258 (1999-10-01), Mathur et al.
patent: 5962283 (1999-10-01), Warren et al.
patent: 5965408 (1999-10-01), Short
patent: 5985646 (1999-11-01), Murphy et al.
patent: 6001574 (1999-12-01), Short et al.
patent: 6004788 (1999-12-01), Short
patent: 6030779 (2000-02-01), Short
patent: 6054267 (2000-04-01), Short
patent: 6096548 (2000-08-01), Stemmer
patent: 6117679 (2000-09-01), Stemmer
patent: 6125331 (2000-09-01), Toh
patent: 6132970 (2000-10-01), Stemmer
patent: 6153410 (2000-11-01), Arnold et al.
patent: 6159690 (2000-12-01), Borrebaeck et al.
patent: 6188965 (2001-02-01), Mayo et al.
patent: 6269312 (2001-07-01), Mayo et al.
patent: 6403312 (2002-06-01), Dahiyat et al.
patent: 6455254 (2002-09-01), Short
patent: 6537776 (2003-03-01), Short
patent: 6605449 (2003-08-01), Short
patent: 2002/0045175 (2002-04-01), Wang et al.
patent: 2003/0032059 (2003-02-01), Wang et al.
patent: 0911396 (1999-04-01), None
patent: 0911396 (1999-05-01), None
patent: 0934999 (1999-08-01), None
patent: WO91/06643 (1991-05-01), None
patent: WO92/06176 (1992-04-01), None
patent: WO95/15972 (1995-06-01), None
patent: WO95/22625 (1995-08-01), None
patent: WO96/16073 (1996-05-01), None
patent: WO96/16073 (1996-05-01), None
patent: WO96/33207 (1996-10-01), None
patent: 97/07205 (1997-02-01), None
patent: 97/20078 (1997-06-01), None
patent: 97/25410 (1997-07-01), None
patent: WO97/33957 (1997-09-01), None
patent: 97/35957 (1997-10-01), None
patent: 97/35966 (1997-10-01), None
patent: WO97/35966 (1997-10-01), None
patent: 97/44361 (1997-11-01), None
patent: 97/48416 (1997-12-01), None
patent: 97/48717 (1997-12-01), None
patent: 97/48794 (1997-12-01), None
patent: 98/00526 (1998-01-01), None
patent: 98/01581 (1998-01-01), None
patent: 98/13485 (1998-04-01), None
patent: 98/13487 (1998-04-01), None
patent: 98/24799 (1998-06-01), None
patent: 98/27230 (1998-06-01), None
patent: 98/28416 (1998-07-01), None
patent: 98/31387 (1998-07-01), None
patent: 98/36080 (1998-08-01), None
patent: 98/41622 (1998-09-01), None
patent: 98/41623 (1998-09-01), None
patent: 98/41653 (1998-09-01), None
patent: 98/42832 (1998-10-01), None
patent: 98/48034 (1998-10-01), None
patent: WO98/49350 (1998-11-01), None
patent: 98/58085 (1998-12-01), None
patent: 99/07837 (1999-02-01), None
patent: 99/08539 (1999-02-01), None
patent: 99/10472 (1999-03-01), None
patent: 99/10539 (1999-03-01), None
patent: 99/19518 (1999-04-01), None
patent: 99/21979 (1999-05-01), None
patent: 99/23107 (1999-05-01), None
patent: 99/23236 (1999-05-01), None
patent: 99/41368 (1999-08-01), None
patent: 99/41369 (1999-08-01), None
patent: 99/41383 (1999-08-01), None
patent: 99/41402 (1999-08-01), None
patent: 99/45154 (1999-09-01), None
patent: 99/57128 (1999-11-01), None
patent: 99/65927 (1999-12-01), None
patent: WO00/00632 (2000-01-01), None
patent: WO00/23564 (2000-04-01), None
patent: 00/37684 (2000-06-01), None
patent: WO00/42559 (2000-07-01), None
patent: WO00/42560 (2000-07-01), None
patent: WO00/42561 (2000-07-01), None
patent: WO00/47612 (2000-08-01), None
patent: WO00/53744 (2000-09-01), None
patent: WO00/58517 (2000-10-01), None
patent: WO01/61344 (2001-08-01), None
patent: WO01/75767 (2001-10-01), None
U.S. Appl. No. 09/408,392, filed Sep. 28, 1999, Crameri et al.
U.S. Appl. No. 09/408,393, filed Sep. 29, 1999, Welch et al.
U.S. Appl. No. 09/416,375, filed Oct. 12, 1999, Selifono et al.
U.S. Appl. No. 09/484,850, filed Jan. 18, 2000, Crameri et al.
U.S. Appl. No. 09/539,486, filed Mar. 30, 2000, Selifonov et al.
U.S. Appl. No. 09/618,579, filed Jul. 18, 2000, Selifonov et al.
U.S. Appl. No. 09/626,588, filed Jul. 27, 2000, Cameri et al.
U.S. Appl. No. 09/626,595, filed Jul. 27, 2000, Cameri et al.
U.S. Appl. No. 09/626,601, filed Jul. 27, 2000, Cameri et al.
U.S. Appl. No. 09/626,926, filed Jul. 27, 2000, Cameri et al.
U.S. Appl. No. 09/626,930, filed Jul. 27, 2000, Cameri et al.
U.S. Appl. No. 09/694,863, filed Jul. 27, 2000, Cameri et al.
U.S. Appl. No. 09/694,864, filed Jul. 27, 2000, Cameri et al.
U.S. Appl. No. 09/718,682, filed Nov. 21, 2000, Selifonov et al.
U.S. Appl. No. 09/718,765, filed Nov. 21, 2000, Selifonov et al.
U.S. Appl. No. 09/718,849, filed Nov. 21, 2000, Selifonov et al.
U.S. Appl. No. 09/721,365, filed Nov. 21, 2000, Selifonov et al.
U.S. Appl. No. 09/721,395, filed Nov. 21, 2000, Selifonov et al.
U.S. Appl. No. 09/721,396, filed Nov. 21, 2000, Selifonov et al.
U.S. Appl. No. 09/721,598, filed Nov. 21, 2000, Selifonov et al.
U.S. Appl. No. 09/721,601, filed Nov. 21, 2000, Cameri et al.
Martin van Heel, “A New Family of Powerful Multivariates Statistical Sequence Analysis Techniques,” J. Mol. Biol, 220:877-887 (1991).
Goldman et al., “Estimating Protein Function From Combinatorial Sequence Data Using Decision Algorithms and Neural Networks,” Drug Dev. Research 33:125-132 (1994).
Gustafsson et al., “Exploration of Sequence Space for Protein Engineering,” J. Mol. Recognit. 14:308-314 (2001).
Miyazawa et al., “Residue-Residue Potentials with a Favorable Contact Pair Term and an Unfavorable High Packing Density Term, for Simulation and Threading,” J. Mol. Biol., 256:623-644 (1996).
Chao Zhang, “Extracting Contact Energies From Protein Structures: A Study Using a Simplified Model,” Proteins: Structure, Function, and Genetics, 31:299-308 (1998).
Miyazawa et al., “Self-Consistent Estimation of Inter-Residue Protein Contact Energie

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