Modulation of biological signal transduction by RNA...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

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C435S091100, C435S091310, C435S320100, C435S375000, C435S455000, C536S023100, C536S024500

Reexamination Certificate

active

10444795

ABSTRACT:
Compositions and methods relating to small interfering RNA (siRNA) polynucleotides are provided as pertains to modulation of biological signal transduction. Shown are siRNA polynucleotides that interfere with expression of members of the protein tyrosine phosphatase (PTP) class of enzymes that mediate signal transduction, and with certain MAP kinase kinases (MKK). In certain preferred embodiments siRNA modulate signal transduction pathways comprising SHP2, cdc14a/b, cdc25A/B/C, KAP, PTP-ε, PRL-3, CD45, dual specificity phosphatase-3 (DSP-3), MKK-4, and/or MKK-7. Modulation of PTP-mediated biological signal transduction has uses in diseases associated with defects in cell proliferation, cell differentiation and/or cell survival, such as metabolic disorders (including diabetes and obesity), cancer, autoimmune disease, infectious and inflammatory disorders and other conditions. The invention also provides siRNA polynucleotides that interfere with expression of chemotherapeutic target polypeptides, such as DHFR, thymidylate synthetase, and topoisomerase I.

REFERENCES:
patent: 5912138 (1999-06-01), Tonks et al.
patent: 5951979 (1999-09-01), Tonks et al.
patent: 6135942 (2000-10-01), Leptin
patent: 6261840 (2001-07-01), Cowsert et al.
patent: 6326193 (2001-12-01), Liu et al.
patent: 6331614 (2001-12-01), Wong et al.
patent: 6342595 (2002-01-01), Karin et al.
patent: 6506559 (2003-01-01), Fire et al.
patent: 2001/0029617 (2001-10-01), Ruvkun et al.
patent: 2002/0007051 (2002-01-01), Cheo et al.
patent: 2003/0068821 (2003-04-01), Lois-Caballe et al.
patent: 2003/0084471 (2003-05-01), Beach et al.
patent: 1 152 056 (2001-11-01), None
patent: WO 97/00315 (1997-01-01), None
patent: WO 98/04712 (1998-02-01), None
patent: WO 99/32619 (1999-07-01), None
patent: WO 99/46268 (1999-09-01), None
patent: WO 00/32779 (2000-06-01), None
patent: WO 00/44895 (2000-08-01), None
patent: WO 00/49035 (2000-08-01), None
patent: WO 00/60092 (2000-10-01), None
patent: WO 00/75339 (2000-12-01), None
patent: WO 01/05983 (2001-01-01), None
patent: WO 01/21812 (2001-03-01), None
patent: WO 01/29058 (2001-04-01), None
patent: WO 01/34815 (2001-05-01), None
patent: WO 01/36646 (2001-05-01), None
patent: WO 01/42443 (2001-06-01), None
patent: WO 01/46394 (2001-06-01), None
patent: WO 01/49844 (2001-07-01), None
patent: WO 01/68836 (2001-09-01), None
patent: WO 01/75164 (2001-10-01), None
patent: WO 01/77350 (2001-10-01), None
patent: WO 01/88121 (2001-11-01), None
patent: WO 01/92513 (2001-12-01), None
patent: WO 02/44321 (2002-06-01), None
patent: WO 02/055692 (2002-07-01), None
patent: WO 02/055693 (2002-07-01), None
Opalinska, J.B. et al., Nature Rev., vol. 1, pp. 503-514 (2002).
Chirila, T.V. et al., Biomaterials, vol. 23, pp. 321-342 (2002).
Branch, A.D., Trends in Biochem. Sci., vol. 23, pp. 45-50 (1998).
Peracchi, A., Rev. Med. Virolo.; vol. 14, pp. 47-64 (2004).
Agrawal, S. et al., Molecular Med. Today, vol. 6, pp. 72-81 (2000).
Crooke, S.T., Antisense Research & Application, Chapter 1, pp. 1-50, S.T. Crooke, ed., Springer-Verlag, Publ. (1998).
Agami, R. et al., “Distinc Initiation and Maintenance Mechanisms Cooperate to Induce G1 Cell Cycle Arrest in Response to DNA Damage,”Cell 102(1):55-66, Jul. 2000.
Andersen, J. et al., “Structural and Evolutionary Relationships Among Protein Tyrosine Phosphatase Domains,”Mol. Cell. Biol. 21(21):7117-7136, Nov. 2001.
Bass, B., “The Short Answer,”Nature 411:428-429, May 2001.
Bass, B., “Double-Stranded RNA as a Template for Gene Silencing,”Cell 101(3):235-238, Apr. 2000.
Berstein, E. et al., “The Rest is Silence,”RNA 7:1509-1521, 2001.
Brautigan, D. et al., “Serine Phosphorylation of Protein Tyrosine Phosphatase (PTP1B) in HeLa Cells in Repsonse to Analogues of cAMP or Diacylglycerol Plus Okadaic Acid,”Mol. Cell Biochem. 127/128:121-129, Nov. 1993.
Brummelkamp, T. et al., “A System for Stable Expression of Short Interfering RNAs in Mammalian Cells,”Science 296: 550-553, Apr. 2002.
Carthew, R., “Gene Silencing by Double-Stranded RNA,”Curr. Opin. Cell Biol. 13:244-248, Apr. 2001.
Charbonneau, H. et al., “The Leukocyte Common Antigen (cD45): A Putative Receptor-Linked Protein Tyrosine Phosphatase,”Proc. Natl. Acad. Sci. USA 85(19):7182-7186, Oct. 1988.
Check, E., “Patent Flurry Casts Cloud Over Gene Silencing,”Nature 417, p. 779, Jun. 2002.
Cheng, A. et al., “Coordinated Action of Protein Tyrosine Phosphatases in Insulin Signal Transduction,”Eur. J. Biochem 269:1050-1059, 2002.
Clemens, J. et al., “Use of Double-Stranded RNA Interference inDrosophilaCell Lines to Dissect Signal Transduction Pathways,”Proc. Natl. Acad. Sci. USA 97(12):6499-6503, Jun. 2000.
Dadke, S. et al., “Phosphorylation and Activation of Protein Tyrosine Phosphatase (PTP) 1B by Insulin Receptor,”Mol. Cell. Biochem. 221(1&2):147-154, May 2001.
Demetrick, D. J. et al., “Chromosomal Mapping of the Genes for the Human Cell Cycle Proteins Cyclin C (CCNC), Cyclin E (CCNE), p. 21(CDKNI), and KAP (CDKN3),”Cytogenet. and Cell Genet. 69:190-192, 1995.
Donzelli, M. et al., “Dual Mode of Degradation of Cdc25 A Phosphatase,”The EMBO Journal 21(18):4875-4884, 2002.
Elbashir, S. et al., “Duplexes of 21-Nucleotide RNAs Mediate RNA Interference in Cultured Mammalian Cells,”Nature 411:494-498, May 2001.
Elbashir, S. et al., “RNA Interference is Mediated by 21—and 22-Nucleotide RNAs,”Genes&Development 15:188-200, 2001.
Elchebly, M. et al., “Increased Insulin Sensitivity and Obesity Resistance in Mice Lacking the Protein Tyrosine Phosphatase-1B Gene,”Science 283:1544-1548, Mar. 1999.
Elson, A., “Protein Tyrosine Phosphatase ε Increases trhe Risk of Mammary Hyperplasia and Mammary Tumors in Transgenic Mice,”Oncogene 18(52):7535-7542, Dec. 1999.
Fire, A. et al., “Potent and Specific Genetic Interference by Double-Stranded RNA inCaenorhabditis elegans,” Nature 391:806-811, Feb. 1998.
Flint, A. et al., “Multi-Site Phosphorylation of the Protein Tyrosine Phosphatase, PTP1B: Identification of Cell Cycle Regulated and Phorbol Ester Stimulated Sites of Phosphorylation,”EMBO J. 12(5):1937-1946, May 1993.
Flint, A. et al., “Development of ‘Substrate-Trapping’ Mutants to Identify Physiological Substrates of Protein Tyrosine Phosphatases,”Proc. Natl. Acad. Sci. USA 94:1680-1685, Mar. 1997.
Fukada, T. et al., “The Reciprocal Role of Egr-1 and Sp Family Proteins in Regulation of the PTP1B Promoter in Response to the p210 Bcr-Abl Oncoprotein-Tyrosine Kinase,”J. Biol. Chem. 276(27):25512-25519, Jul. 2001.
Grabarek, J. et al.,“RNA Interference by Production of Short-Hair pin dsRNA in ES Cells, Their Differentiated Derivatives, and in Somatic Cell Lines,”Biotechniques 34(4):734-744, Apr. 2003.
Hannon, G. et al., “KAP: A Dual Specificity Phosphatase that Interacts with Cyclin-Dependent Kinases,”Proc. Natl. Acad. Sci. USA 91:1731-1735, Mar. 1994.
Harborth, J. et al., “Identification of Essential Genes in Cultured Mammalian Cells Using Small Interfering RNAs,”J. Cell Sci. 114(24):4557-4565, 2001.
Hayes, S. et al., “Targeted Suppression of Gene Expression Using siRNA and RiboJuice™ siRNA Transfection Reagent,”inNovations 14:9-11, 2002.
Hutvágner, G. et al., “RNAi: Nature Abhors a Double-Strand,”Curr. Opin. Genetics&Development 12:225-232, 2002.
Kisielow, M. et al., “Isoform-Specific Knockdown and Expression of Adaptor Protein SchA Using Small Interfering RNA,”Biochem. J. 363:1-5, 2002.
Klaman L. et al., “Increase Energy Expenditure, Decreased Adiposity, and Tissue-Specific Insulin Sensitivity in Protein Tyrosine Phosphatase 1B-Deficient Mice,”Mol. Cell. Biol. 20(15):5479-5489, Aug. 2000.
Lam, M. et al., “Cellular Stress Regulates the Nucleocytoplasmic Distrib

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