Isolation and cultivation of microorganisms from natural...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving viable micro-organism

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C435S030000, C435S244000, C435S252100, C435S297100, C435S287900, C435S288500

Reexamination Certificate

active

07011957

ABSTRACT:
The method of the invention is directed to the novel use of a diffusion chamber within which previously “uncultivatible” microorganisms can be isolated. Rather than attempting to replicate the natural environment of an unknown microorganism, the method of the invention provides for exposing dividing microorganisms to all the components of the original environment while simultaneously containing the resulting colonies so that they can be isolated. The method of the invention can take advantage of the recognition that the preponderance of difficult-to-grow microorganisms do not form colonies visible to the naked eye. Therefore, these organisms must be isolated under a compound microscope as “microcolonies.” In addition, methods according to the invention permit the isolation of novel microorganisms capable of growing in artificial media only in co-culture in the presence of a companion microorganism.

REFERENCES:
patent: 3893891 (1975-07-01), Tannenbaum et al.
patent: 4271266 (1981-06-01), Bergy et al.
patent: 5589352 (1996-12-01), Breznak et al.
patent: 5593883 (1997-01-01), Cano et al.
patent: 5705378 (1998-01-01), Yoshida et al.
patent: 5710039 (1998-01-01), Hirasawa et al.
patent: 5739019 (1998-04-01), Walker et al.
patent: 5807735 (1998-09-01), Klibanov et al.
patent: 5837691 (1998-11-01), Hegde et al.
patent: 5849724 (1998-12-01), Leboul et al.
patent: 5897996 (1999-04-01), Kimbara et al.
patent: 5945331 (1999-08-01), Kozaki et al.
patent: 5972686 (1999-10-01), Kang et al.
patent: 5985274 (1999-11-01), Argoudelis et al.
patent: 5998198 (1999-12-01), Nakayama et al.
patent: 6015706 (2000-01-01), Kim et al.
patent: 6019984 (2000-02-01), MacInnes et al.
patent: 6030779 (2000-02-01), Short
patent: 6077515 (2000-06-01), Barbour et al.
patent: 6110712 (2000-08-01), Tsuchida et al.
patent: 6171844 (2001-01-01), Numata et al.
patent: 6323021 (2001-11-01), Wang et al.
patent: 6331419 (2001-12-01), Moriya et al.
patent: WO 97/37036 (1997-09-01), None
patent: WO 97/37036 (1997-10-01), None
patent: WO 98/14784 (1998-04-01), None
patent: WO 99/40989 (1999-08-01), None
patent: WO 01/07034 (2001-02-01), None
Jensen et al., Annu. Rev. Microbiol., vol. 48, pp. 559-584 (1994).
Tighe et al., Indoor Air Reviews, May 1995, pp. 20-22.
Paul R. Jensen, et al., “Strategies for the Discovery of Secondary Metabilites from Marine Bacteria: Ecological Perspectives”, Annu. Rev. Microbiol., 1994, pp. 559-584.
Paul R. Jensen, et al., “Distribution of Actinomycetes in Near-Shore Tropical Marine Sediments”, Applied and Environmental Microbiology, Apr. 1991, pp. 1102-1108.
William Fenical, “New Pharmaceuticals from Marine Organisms”, Marine Biotechnology, TIBTECH, Sep. 1997, vol. 15, pp. 339-341.
Supreme Court of the United States, “Diamond, Commissioner of Patens and Trademarksv.Chakrabarty”, No. 79-136, Decided Jun. 16, 1980, USPQ pp. 193-202.
Court of Customs and Patent Appeals, “In re Bergy, Coats, and Malik; In re Chakrabarty”, Nos. 76-712 and 77-535, Decided Mar. 29, 1979, USPQ pp. 352-395.
“Living Organisms and the Product of Nature Doctrine”, Biotechnology and the Federal Circuit, §3.2, pp. 40-41, author unknown.
Kaeberlin et al., “Isolation of “uncultivables” into Pure Culture,” Abstracts of the General Meeting of the American Society for Microbiology, vol. 102, 2002, p. 468.
McFeters et al., “Survival of Coliform Bacteria in Natural Waters Field and Laboratory Studies with Membrane Filter Chambers,” Applied Microbiology, vol. 24, No. 5, 1972, pp 805-811.
Vasconcelos et al., “Survival of Bacteria in Seawater Using a Diffusion Chamber Apparatus in Situ,” Applied and Environmental Microbiology, vol. 31, No. 6, 1976, pp 913-920.
Allsopp, D., Colwell, R.R., & Hawksworth, D.L., “Microbial Diversity and Ecosystem Function” (CAB International, Wallingford, U.K., 1995) Cover page and pp 4-5 only.
Barer, M.R., & Hardwood, C.R. “Bacterial viability and culturability”. Adv. Microb, Physiol. 41: 93-137 (1999).
Barns, S.M., Fundyga, R.E., Jeffries, M. W., & Pace, N.R., “Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment,”Proc. Natl. Acad. Sci.USA 91: 1609-1613 (1994).
Bassler, B.L., “How bacteria talk to each other: regulation of gene expression by quorum sensing,”Curr. Opin. Microbiol.2: 582-587 (1999).
Brenner et al., Classification of Procaryotic Organisms and the Concept of Bacterial Speciation, “Bergy's Manual of Systematic Microbiology,” 2nded. 1 (Springer-Verlag, Berlin 2001), pp 27-31.
Butkevich, V.S., “Distribution of bacteria in the water column and sediments in the Barentsevo Sea: methodology and first results,” Trans. Oceanogr. Inst. Moscow 2: 5-36 (1932).
Butkevich, V.S., “Zur Methodik der bakterioloschen Meeresutersuchungen and einige Angaben uber die Verteilung der Bakterien im Wasser und in den Buden des Barents Meeres,” Trans. Oceanogr. Inst. Moscow 2: 36-39 (1932).
Cifuentes, A., Anton, J., Benlock, S., Donelly, A. Herbert, R.A. and Rodrigues-Valera, F., “Prokaryotic diversity in Zostera noltii-colonized marine sediments,”Appl. Environ. Microbiol.66: 1715-1719 (2000).
Clesceri, L.S., Greenberg, A.E., and Eaton, A.D., “Standard methods for the examination of water and wastewater, 20thed,” American Public Health Association, pp 9-54-9-64, (1996).
Colwell, R.R., & Grimes, D.J., in “Nonculturable microorganisms in the environment,” (eds Colwell, R.R., & Grimes, D.J.) 1-6 (ASM Press, Washington DC, pp 1-6, 2000.
DeLong, E. F., “Archaea in coastal marine environments,”Proc. Natl. Acad. Sci.USA 89: 5685-5689 (1992).
Dojka, M.A., Harris, J.K. & Pace, N.R., “Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria,”Appl. Environ. Microbiol.66:1617-1621 (2000).
Epstein, S.S., “Microbial food webs in marine sediments. II. Seasonal changes in trophic interactions in sandy tidal flat community,”Microb. Ecol.34: 199-209 (1997).
Fuhrman, J.A., McCallum, K., & Davis, A. A., “Noval major archeabacterial group from marine plankton,”Nature356: 148-149 (1992).
Giovannoni et al., “Evolution, Diversity and Molecular Ecology of Marine Prokaryotes,” Microbial Ecology of the Oceans, pp 47-84, 2000.
Giovannoni, S.J., Britschgi. T.B., Moyer, C.L., & Field, K.G., “Genetic diversity in Sargasso Sea bacterioplankton,”Nature345, pp 60-63, 1990.
Grimes et al., “The Importance of Viable but Nonculturable Bacteria in Biogeochemistry,” Nonculturable Microorganisms in the Environments, pp 209-227, 2000.
Jannasch, H.W., & Jones, G.E., “Bacterial populations in seawater as determined by different methods of enumeration,”Limnol. Oceanogr.4: 128-139 (1959).
Kaeberlein, T., Lewis, K., and Epstein, S.S., “Insolating ‘Uncultivable’ Microorganisms in Pure Culture in a Simulated Natural Environment,”Science, vol. 296, pp. 1127-1129, (2002).
Lewin, R.A., “New Herpetosiphon species (Flexibacteralis),”Can. J. Microbiol.16: 517-520 (1970).
Llobet-Brossa, E., Rosello-Mora, R & Amann, R.I., “Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization,”Appl. Environ. Microbiol.64: 2691-2696 (1998).
Lutz-Arend Mayer-Reil, L.A., “Autoradiography and epifluorescent miscrocopy combined for the determination of number and spectrum of actively metabolizing bacteria in natural waters,”Appl. Environ. Microbiol.36: 506-512 (1978).
Porter, K.G., & Feig, Y.S., “The use of DAPI for identifying and counting aquatic microflora,”Limnol. Oceanogr.25: 943-948 (1980).
Schauder et al., “The Luxs family of bacterial autoinducers: biosyntesis of a noval quorum-sens

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Isolation and cultivation of microorganisms from natural... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Isolation and cultivation of microorganisms from natural..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Isolation and cultivation of microorganisms from natural... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-3576380

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.