Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical
Reexamination Certificate
2006-04-04
2006-04-04
Brusca, John (Department: 1631)
Data processing: measuring, calibrating, or testing
Measurement system in a specific environment
Biological or biochemical
C702S020000, C435S004000, C435S006120, C435S015000, C435S091200, C536S023100, C536S024100, C530S300000, C530S350000
Reexamination Certificate
active
07024312
ABSTRACT:
“In silico” nucleic acid recombination methods, related integrated systems utilizing genetic operators and libraries made by in silico shuffling methods are provided.
REFERENCES:
patent: 4959312 (1990-09-01), Sirotkin
patent: 4994379 (1991-02-01), Chang
patent: 5023171 (1991-06-01), Ho et al.
patent: 5043272 (1991-08-01), Hartley et al.
patent: 5066584 (1991-11-01), Gyllensten et al.
patent: 5198346 (1993-03-01), Ladner et al.
patent: 5223409 (1993-06-01), Ladner et al.
patent: 5264563 (1993-11-01), Huse
patent: 5319308 (1994-06-01), Dechene et al.
patent: 5408181 (1995-04-01), Dechene et al.
patent: 5447839 (1995-09-01), Manos et al.
patent: 5506793 (1996-04-01), Straayer et al.
patent: 5512463 (1996-04-01), Stemmer
patent: 5514588 (1996-05-01), Varadaraj
patent: 5519319 (1996-05-01), Smith et al.
patent: 5521077 (1996-05-01), Khosla et al.
patent: 5565350 (1996-10-01), Kmiec
patent: 5580730 (1996-12-01), Okamoto
patent: 5603793 (1997-02-01), Yoshida et al.
patent: 5605793 (1997-02-01), Stemmer
patent: 5612205 (1997-03-01), Kay et al.
patent: 5650722 (1997-07-01), Smith et al.
patent: 5675253 (1997-10-01), Smith et al.
patent: 5717085 (1998-02-01), Little et al.
patent: 5741691 (1998-04-01), Arnold et al.
patent: 5760012 (1998-06-01), Kmiec et al.
patent: 5763239 (1998-06-01), Short et al.
patent: 5789228 (1998-08-01), Lam et al.
patent: 5789577 (1998-08-01), Geysen
patent: 5811238 (1998-09-01), Stemmer et al.
patent: 5814473 (1998-09-01), Warren et al.
patent: 5824469 (1998-10-01), Horwitz et al.
patent: 5828905 (1998-10-01), Rao
patent: 5830696 (1998-11-01), Short
patent: 5830721 (1998-11-01), Stemmer et al.
patent: 5834252 (1998-11-01), Stemmer et al.
patent: 5837458 (1998-11-01), Minshull et al.
patent: 5866363 (1999-02-01), Pieczenik
patent: 5869644 (1999-02-01), Shortle et al.
patent: 5876997 (1999-03-01), Kretz
patent: 5912119 (1999-06-01), Radman et al.
patent: 5925749 (1999-07-01), Mathur et al.
patent: 5939250 (1999-08-01), Short
patent: 5939300 (1999-08-01), Robertson et al.
patent: 5942430 (1999-08-01), Robertson et al.
patent: 5948666 (1999-09-01), Callen et al.
patent: 5958672 (1999-09-01), Short
patent: 5958751 (1999-09-01), Murphy et al.
patent: 5962258 (1999-10-01), Mathur et al.
patent: 5962283 (1999-10-01), Warren et al.
patent: 5965408 (1999-10-01), Short
patent: 5985646 (1999-11-01), Murphy et al.
patent: 6001574 (1999-12-01), Short et al.
patent: 6004788 (1999-12-01), Short
patent: 6030779 (2000-02-01), Short
patent: 6054267 (2000-04-01), Short
patent: 6096548 (2000-08-01), Stemmer
patent: 6107073 (2000-08-01), Chen
patent: 6117679 (2000-09-01), Stemmer
patent: 6125331 (2000-09-01), Toh
patent: 6132970 (2000-10-01), Stemmer
patent: 6153410 (2000-11-01), Arnold et al.
patent: 6159690 (2000-12-01), Borrebaeck et al.
patent: 6188965 (2001-02-01), Mayo et al.
patent: 6269312 (2001-07-01), Mayo et al.
patent: 6323030 (2001-11-01), Stemmer
patent: 6365408 (2002-04-01), Stemmer
patent: 6403312 (2002-06-01), Dahiyat et al.
patent: 6518065 (2003-02-01), Stemmer
patent: 6537776 (2003-03-01), Short
patent: 6605449 (2003-08-01), Short
patent: 0911396 (1999-04-01), None
patent: 0911396 (1999-05-01), None
patent: 0934999 (1999-08-01), None
patent: WO 91/06643 (1991-05-01), None
patent: WO 92/06176 (1992-04-01), None
patent: WO 95/15972 (1995-06-01), None
patent: WO 95/22625 (1995-08-01), None
patent: WO 96/16073 (1996-05-01), None
patent: WO 96/16073 (1996-05-01), None
patent: WO 96/33207 (1996-10-01), None
patent: WO 97/07205 (1997-02-01), None
patent: WO 97/20078 (1997-06-01), None
patent: WO 97/25410 (1997-07-01), None
patent: WO 97/33957 (1997-09-01), None
patent: WO 97/35957 (1997-10-01), None
patent: WO 97/35966 (1997-10-01), None
patent: WO 97/44361 (1997-11-01), None
patent: WO 97/48416 (1997-12-01), None
patent: WO 97/48717 (1997-12-01), None
patent: WO 97/48794 (1997-12-01), None
patent: WO 98/00526 (1998-01-01), None
patent: WO 98/01581 (1998-01-01), None
patent: WO 98/13485 (1998-04-01), None
patent: WO 98/13487 (1998-04-01), None
patent: WO 98/24799 (1998-06-01), None
patent: WO 98/27230 (1998-06-01), None
patent: WO 98/28416 (1998-07-01), None
patent: WO 98/31837 (1998-07-01), None
patent: WO 98/36080 (1998-08-01), None
patent: WO 98/41622 (1998-09-01), None
patent: WO 98/41623 (1998-09-01), None
patent: WO 98/41653 (1998-09-01), None
patent: WO 98/42832 (1998-10-01), None
patent: WO 98/48034 (1998-10-01), None
patent: WO 98/49350 (1998-11-01), None
patent: WO 98/58085 (1998-12-01), None
patent: WO 99/07837 (1999-02-01), None
patent: WO 99/08539 (1999-02-01), None
patent: WO 99/10472 (1999-03-01), None
patent: WO 99/10539 (1999-03-01), None
patent: WO 99/19518 (1999-04-01), None
patent: WO 99/21979 (1999-05-01), None
patent: WO 99/23107 (1999-05-01), None
patent: WO 99/23236 (1999-05-01), None
patent: WO 99/41368 (1999-08-01), None
patent: WO 99/41369 (1999-08-01), None
patent: WO 99/41383 (1999-08-01), None
patent: WO 99/41402 (1999-08-01), None
patent: WO 99/45154 (1999-09-01), None
patent: WO 99/57128 (1999-11-01), None
patent: WO 99/65927 (1999-12-01), None
patent: WO 00/00632 (2000-01-01), None
patent: WO 00/23564 (2000-04-01), None
patent: WO 00/37684 (2000-06-01), None
patent: WO00/42559 (2000-07-01), None
patent: WO 00/42560 (2000-07-01), None
patent: WO 00/42561 (2000-07-01), None
patent: WO00/47612 (2000-08-01), None
patent: WO 00/53744 (2000-09-01), None
patent: WO 00/58517 (2000-10-01), None
patent: WO01/61344 (2001-08-01), None
patent: WO01/75767 (2001-10-01), None
patent: WO03/055978 (2003-10-01), None
Josson et al. Nucleic Acids Research, 1993, vol. 21, No. 3, pp. 733-739.
Dahiyat et al., “Automated design of the surface positions of protein helices”Protein Science(1997) 6:1333-1337.
Dahiyat and Mayo “De Novo Protein Design: Fully Automated Sequence Selection”Science(1997) vol. 278 pp. 82-87.
Dahiyat et al., “De Novo Protein Design: Towards Fully Automated Sequence Selection”J. Mol. Biol.(1997) 273:789-796.
Dahiyat and Mayo “Probing the role of packing specificity in protein design”Proc. Matl. Acad. Sci. U.S.A., 1997 vol. 94 pp. 10172-10177.
Gordon and Mayo “Branch-and-Terminate: a combinatorial optimization algorithm for protein design”Structure(1999) 7:1089-1098.
Gordon et al., “Energy functions for protein design”Current Opinion in Structural Biology(1999) 9:509-513.
Gordon and Mayo “Radical Performance Enhancements for Combinatorial Optimization Algorithms Based on the Dead-End Elimination Theorem”Journal of Computational Chemistry, 1998 vol. 19 No. 13, 1505-1514.
Haney et al., “Structural Basis for Thermostability and Identification of Potential Active Site Residues for Adenylate Kinases From the Archaeal Genus Methanococcus”Proteins(1997) 28:117-130.
Harayama, Shigeaki, (1998) “Artificial evolution by DNA shuffling”Tibtechvol. 16 pp 76-82.
Malakauskas and Mayo “Design, structure and stability of a hyperthermophilic protein variant”Nature Structural Biology(1998) vol. 5, No. 6, 470-475.
Pollock et al., “Coevolving Protein Residues: Maximum Likelihood Identification and Relationship to Structure”J. Mol. Biol.(1999) 287:187-198.
Stemmer (1994) DNA shuffling by random fragmentation and reassembly: In vitro recombination for molecular evolutionProc. Natl. Acad. Sci. USAvol. 91, pp 10747-10751.
Stemmer et al., “Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides”Gene(1995) 164:49-53.
Street and Mayo “Computational protein design”Structure(1999) 7:R105-R109.
Street and Mayo “Intrinsic B-sheet propensities result from van der Waals interactions between side chains and local backbone”Proc. Natl. Acad. Sci. U.S.A.(1999) vol. 96 pp. 9074-9076.
Street and Mayo “Pairwise calculation of protein solvent-accessible surface areas”Folding&Design(1998) 3:253-258.
Strop and Mayo “Rubredoxin Variant Folds without Iron”J. American Chem. Soc.(1999) vol. 121 No. 11 pp. 234
del Cardayre Stephen
Giver Lorraine J.
Gustafsson Claes
Minshull Jeremy
Patten Phillip A.
Beyer Weaver & Thomas LLP
Brusca John
Fujita Sharon M.
Kruse Norman J.
Maxygen Inc.
LandOfFree
Methods for making character strings, polynucleotides and... does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Methods for making character strings, polynucleotides and..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methods for making character strings, polynucleotides and... will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-3544879