System and method for identifying a gapped permutation pattern

Details System and method for identifying a gapped permutation pattern System and method for identifying a gapped permutation pattern

2011-03-29

2011-03-29

Brusca, John S (Department: 1631)

Data processing: measuring, calibrating, or testing

Measurement system in a specific environment

Biological or biochemical

C365S094000, C700S001000

Reexamination Certificate

active

07917305

ABSTRACT:
A system and method for identifying gapped permutation patterns, includes discovering all clusters in the input data sequence that occur with a predetermined gap.

REFERENCES:
patent: 2005/0060321 (2005-03-01), Parida et al.
Hoberman et al. The Statistical Analysis of Spatially Clustered Genes under the Maximum Gap Criterion Journal of Computational Biology vol. 12, pp. 1083-1102 (2005).
Xin He, et al. “Identifying Conserved Gene Clusters in the Presence of Orthologous Groups”, RECOMB'04, Mar. 27-31, San Diego, CA, pp. 272-280, 2004.
Anne Bergeron, et al. “On the Similarity of Sets of Permutations and its Applications to Genome Comparison”, COCOON 2003, LNCS 2697, pp. 68-79.
Anne Bergeron, et al., “The Algorithmic of Gene Teams”, WABI 2002, LNCS 2452, pp. 464-476.

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