Methods for arbitrary peptide synthesis

Details Methods for arbitrary peptide synthesis Methods for arbitrary peptide synthesis

2011-03-22

2011-03-22

Steele, Amber D. (Department: 1639)

Chemistry: natural resins or derivatives; peptides or proteins;

Peptides of 3 to 100 amino acid residues

Synthesis of peptides

C435S041000, C536S023100, C702S019000, C506S043000

Reexamination Certificate

active

07910695

ABSTRACT:
Methods, apparatus, systems, computer programs and computing devices related to biologically assembling and/or synthesizing peptides and/or proteins are disclosed.

REFERENCES:
patent: 3647390 (1972-03-01), Kubodera et al.
patent: 5081584 (1992-01-01), Omichinski et al.
patent: 5218101 (1993-06-01), Hansen
patent: 5358862 (1994-10-01), Hardesty et al.
patent: 5562622 (1996-10-01), Tihon
patent: 5635400 (1997-06-01), Brenner
patent: 6457361 (2002-10-01), Takeuchi et al.
patent: 6562622 (2003-05-01), Coia et al.
patent: 6620587 (2003-09-01), Taussig et al.
patent: 6722200 (2004-04-01), Roukes et al.
patent: 6846638 (2005-01-01), Shipwash
patent: 7247448 (2007-07-01), Erdmann et al.
patent: 7799542 (2010-09-01), Hyde et al.
patent: 2002/0127623 (2002-09-01), Minshull et al.
patent: 2003/0100000 (2003-05-01), Martin
patent: 2005/0260653 (2005-11-01), Labaer et al.
patent: 2006/0078888 (2006-04-01), Griffiths et al.
patent: 2006/0223178 (2006-10-01), Barber et al.
patent: 2007/0119510 (2007-05-01), Kartalov et al.
patent: 2009/0081643 (2009-03-01), Preminger et al.
patent: WO 2004/050825 (2004-06-01), None
Marahiel et al (1997 Chem. Rev. 2651-2673).
Pavlov et al (1997 Biochime 79:415-422).
Forster, Anthony C.; Weissbach, Herbert; Blacklow, Stephen C.; “A Simplified Reconstitution of mRNA-Directed Peptide Synthesis: Activity of the Epsilon Enhancer and an Unnatural Amino Acid”; Analytical Biochemistry; bearing a date of 2001; pp. 60-70; vol. 297; Academic Press.
Josephson, Kristopher; Hartman, Matthew C. T.; Szostak, Jack W.; “Ribosomal Synthesis of Unnatural Peptides”; Journal of the American Chemical Society; Jul. 28, 2005; pp. 11727-11735; vol. 127 (33); American Chemical Society; Washington DC.
Wilderer, Peter A., et al.; “Modern scientific methods and their potential in wastewater science and technology”; Water Research; bearing a date of 2002; pp. 370-393; vol. 36; Elsevier Science Ltd.
Champe, et al.; Biochemistry 2ndEdition, Lippincott's Illustrated Reviews; 1994; pp. 389-400; J. B. Lippincott Company, Philadelphia, PA.
Kelly M.; “Mainframe Graphics on a Microcomputer: Display Tektronix-type Plots on Your Microcomputer”; BYTE; Oct. 1983; vol. 8; pp. 439-442.
Menninger Jr.; “Computer Simulation of Ribosome Editing”; Journal of Molecular Biology; 1983; vol. 171; pp. 383-399.
Schilling-Bartetzko, Susanne,; Bartetzko, Andreas; Nierhaus, Knud H.; “Kinetic and Thermodynamic Parameters for tRNA Binding to the Ribosome and for the Translocation Reaction”, The Journal of Biological Chemistry, Mar. 5, 1992, 4703-4712, vol. 267, No. 7, The American Society for Biochemistry and Molecular Biology, Inc., USA.
Zhang, Li et al.; “Antibiotic susceptibility of mammalian mitochondrial translation”; FEBS Letters; bearing a date of 2005; pp. 6423-6427; vol. 579; Elsevier B.V.
U.S. Appl. No. 11/478,551, Hyde et al.
U.S. Appl. No. 11/478,550, Hyde et al.
U.S. Appl. No. 11/478,549, Hyde et al.
U.S. Appl. No. 11/478,548, Hyde et al.
U.S. Appl. No. 11/478,546, Hyde et al.
U.S. Appl. No. 11/478,540, Hyde et al.
U.S. Appl. No. 11/478,539, Hyde et al.
U.S. Appl. No. 11/478,382, Hyde et al.
U.S. Appl. No. 11/478,326, Hyde et al.
U.S. Appl. No. 11/478,308, Hyde et al.
Adelman, M.R.; Blobel, Gunter; Sabatini, David D.; “An Improved Cell Fractionation Procedure for the Preparation of Rat Liver Membrane-Bound Ribosomes”; The Journal of Cell Biology; Bearing a date of 1973; pp. 191-205; vol. 56; located at: www.jcb.org.
Asahara, Haruichi; Uhlenbeck, Olke C.; “Predicting the Binding Affinities of Misacylated tRNAs forThermus ThermophilusEF-Tu.GTP”; Biochemistry; Bearing dates of 2005 and Jul. 29, 2005; pp. 11254-11261; vol. 44, No. 33; American Chemical Society.
Beaulande, Melanie; Tarbouriech, Nicolas; Hartlein, Michael; “Human Cytosolic Asparaginyl-tRNA Synthetase: cDNA Sequence, Functional Expression inEscherichia coliand Characterization as Human Autoantigen”; Nucleic Acids Research; bearing a date of 1998; pp. 521-524; vol. 26, No. 2; Oxford University Press.
Beebe, David J.; Mensing, Glennys A.; Walker, Glenn M.; “Physics and Applications of Microfluidics in Biology”; Annual Review of Biomedical Engineering; bearing a date of 2002; pp. 261-286; vol. 4; Annual Reviews; located at: arjournals.annualreviews.org.
Beringer, Malte; Bruell, Christian; Xiong, Liqun; Pfister, Peter; Bieling, Peter; Katunin, Vladimir I.; Mankin, Alexander S.; Bottger, Erik C.; Rodnina, Marina V.; “Essential Mechanisms in the Catalysis of Peptide Bond Formation on the Ribosome”; The Journal of Biological Chemistry; bearing a date of Oct. 28, 2005; pp. 36065-36072; vol. 280, No. 43; The American Society for Biochemistry and Molecular Biology, Inc.
Bessho, Yoshitaka; Hodgson, David R.W.; Suga, Hiroaki; “Research Article: A tRNA Aminoacylation System for Non-Natural Amino Acids Based on a Programmable Ribozyme”; Nature Biotechnology; bearing dates of Jul. 2002; pp. 723-728; vol. 20; Nature Publishing Group; located at: http://biotech.nature.com.
Blanchard, Scott C.; Gonzalez, Ruben L., Jr.; Kim, Harold D.; Chu, Steven; Puglisi, Joseph D.; “Articles: tRNA Selection and Kinetic Proofreading in Translation”; Nature Structural & Molecular Biology; bearing a date of Oct. 2004; pp. 1008-1014; vol. 11, No. 10; Nature Publishing Group; located at: http://www.nature.com
atstructmolbiol.
Blanchard, Scott C.; Kim, Harold D.; Gonzalez, Ruben L.; Jr.; Puglisi, Joseph D.; Chu, Steven; “Biophysics: tRNA Dynamices on the Ribosome During Translation”; PNAS; bearing a date of Aug. 31, 2004; pp. 12893-12898; vol. 101, No. 35; The National Academy of Sciences of the USA; located at: www.pnas.org/chi/doi/10.1073/pnas.0403884101.
Bocchetta, Maurizio; Xiong, Liqun; Mankin, Alexander S.; “23S rRNA Positions Essential for tRNA Binding in Ribosomal Functional Sites”; Proceedings of the National Academy of Sciences; bearing a date of Mar. 1998; pp. 3525-3530; vol. 95; The National Academy of Sciences; located at: http://www.pnas.org.
Brandt, Ole; Hoheisel, Jorg D.; “Opinion: Peptide Nucleic Acids on Microarrays and Other Biosensors”; Trends in Biotechnology; bearing a date of Dec. 2004; pp. 617-622; vol. 22, No. 12; Elsevier Ltd; located at: www.sciencedirect.com.
Brune, Martin; Hunter, Jackie L.; Howell, Steven A.; Martin, Stephen R.; Hazlett, Theodore L.; Corrie, John E.T.; Webb, Martin R.; “Mechanism of Inorganic Phosphate Interaction with Phosphate Binding Protein fromEscherichia coli”; Biochemistry; bearing a date of 1998; pp. 10370-10380; vol. 37; American Chemical Society.
Burns, Mark A.; Johnson, Brian N.; Brahmasandra, Sundaresh N.; Handique, Kalyan; Webster, James R.; Krishnan, Madhavi; Sammarco, Timothy S.; Man, Piu M.; Jones, Darren; Heldsinger, Dylan; Mastrangelo, Carlos H.; Burke, David T.; “Reports: An Integrated Nanoliter DNA Analysis Device”; Science Magazine; bearing a date of Oct. 16, 1998; pp. 484-487; vol. 282; located at: www.sciencemag.com.
Capone, John P.; Sharp, Phillip A.; Rajbhandary, Uttam L.; “Amber, Ochre and Opal Suppressor tRNA Genes Derived From a Human Serine tRNA Gene”; The EMBO Journal; bearing a date of 1985; pp. 213-221; vol. 4, No. 1; IRL Press Limited, Oxford, England.
Cheng, Slew Bang; Skinner, Cameron D.; Taylor, Justine; Attiya, Said; Lee, William E.; Piceill, Gilles; Harrison, D. Jed; “Development of a Multichannel Microfluidic Analysis System Employing Affinity Capillary Electrophoresis for Immunoassay”; Analytical Chemistry; bearing a date of Apr. 1, 2001; pp. 1472-1479; vol. 73, No. 7; American Chemical Society.
Chin, Jason W.; Cropp, T. Ashton; Anderson, J. Christopher; Mukherji, Mridul; Zhang, Zhiwen; Schultz, Peter G.; “Reports: An Expanded Eukaryotic Genetic Code”; Science; bearing a date of Aug. 15, 2003; pp. 964-967; vol. 301; located at: www.sciencemag.org.
Curran, James F.; Yarus, Michael; “R

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