Structural alignment method making use of a double dynamic progr

Details Structural alignment method making use of a double dynamic progr Structural alignment method making use of a double dynamic progr

1997-12-17

2000-09-26

Celsa, Bennett

Data processing: measuring, calibrating, or testing

Measurement system in a specific environment

Biological or biochemical

702 27, G06F 1900, G01N 3100

Patent

active

061253316

ABSTRACT:
There is disclosed a structural alignment method making use of a double dynamic programming algorithm. A distance cut-off approximation is performed, and then .DELTA.N cut-off approximation is performed. An alignment is produced based on the results of the distance cut-off approximation and the .DELTA.N cut-off approximation. Subsequently, an .epsilon.-suboptimal region defined by the obtained approximate solution is determined. Further, double dynamic programing alignment on the full structural environment is performed for residue pairs within the .epsilon.-suboptimal region. The structural alignment method is simpler than conventional methods and can shorten computational time while maintaining high accuracy.

REFERENCES:
patent: 5436850 (1995-07-01), Eisenberg et al.
patent: 5878373 (1999-03-01), Cohen et al.

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