User-configurable generic experiment class for combinatorial...

Data processing: database and file management or data structures – Database and file access – Preparing data for information retrieval

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C707S802000, C717S108000

Reexamination Certificate

active

07908285

ABSTRACT:
Methods and apparatus, including computer program products, implement techniques for processing experimental data in a laboratory data management system. An input specifies a set of variable definitions that define a set of variables for an experiment type to be represented by a pre-defined experiment class. The variables in the set of variables have types selected from a predefined set of data types. Data from an experiment of the experiment type is received. A first representation of the data is stored in a format defined according to the set of variable types. A second representation of the data, derived from the first representation, is presented in a format defined according to the set of variable definitions.

REFERENCES:
patent: 4982338 (1991-01-01), Fujita
patent: 5047929 (1991-09-01), Fujita
patent: 5056035 (1991-10-01), Fujita
patent: 5392209 (1995-02-01), Eason et al.
patent: 5511186 (1996-04-01), Carhart et al.
patent: 5574656 (1996-11-01), Agrafiotis et al.
patent: 5623592 (1997-04-01), Carlson et al.
patent: 5708806 (1998-01-01), DeRose et al.
patent: 5848415 (1998-12-01), Guck
patent: 5959297 (1999-09-01), Weinberg et al.
patent: 5962013 (1999-10-01), Wong et al.
patent: 5980096 (1999-11-01), Thalhammer-Reyero
patent: 6004617 (1999-12-01), Schultz et al.
patent: 6030917 (2000-02-01), Weinberg et al.
patent: 6034775 (2000-03-01), McFarland et al.
patent: 6044366 (2000-03-01), Graffe et al.
patent: 6410331 (2002-06-01), Schultz et al.
patent: 6415276 (2002-07-01), Heger et al.
patent: 6489168 (2002-12-01), Wang et al.
patent: 6507945 (2003-01-01), Rust et al.
patent: 6618852 (2003-09-01), van Eikeren et al.
patent: 6658429 (2003-12-01), Dorsett, Jr.
patent: 6754884 (2004-01-01), Lucas et al.
patent: 6738529 (2004-05-01), Crevier et al.
patent: 6745368 (2004-06-01), Boucher et al.
patent: 6947953 (2005-09-01), Herzenberg et al.
patent: 6968536 (2005-11-01), Jazdzewski
patent: 6983227 (2006-01-01), Thalhammer-Reyero
patent: 7188055 (2007-03-01), Agrafiotis et al.
patent: 7199809 (2007-04-01), Lacy et al.
patent: 7213034 (2007-05-01), Dorsett, Jr.
patent: 7308363 (2007-12-01), Eker et al.
patent: 7478337 (2009-01-01), Kodosky et al.
patent: 2001/0047398 (2001-11-01), Rubenstein
patent: 2002/0049548 (2002-04-01), Bunin
patent: 2004/0044990 (2004-03-01), Schloegel et al.
patent: 2004/0221260 (2004-11-01), Martin et al.
patent: 2005/0130229 (2005-06-01), Dorsett, Jr.
patent: 2005/0267721 (2005-12-01), Thalhammer-Reyero
patent: 2005/0273305 (2005-12-01), Thalhammer-Reyero
patent: 2006/0064674 (2006-03-01), Olson, Jr. et al.
patent: 2006/0168515 (2006-07-01), Dorsett, Jr.
patent: 2006/0277201 (2006-12-01), Dorsett, Jr.
patent: 2007/0050092 (2007-03-01), Kenyon et al.
patent: 2007/0143240 (2007-06-01), Goldwasser et al.
patent: 2007/0185657 (2007-08-01), Lacy et al.
patent: 2007/0214101 (2007-09-01), Wang et al.
patent: 2008/0015837 (2008-01-01), Smith et al.
patent: WO 99/33003 (1999-07-01), None
patent: WO 00/23921 (2000-04-01), None
patent: WO 01/79949 (2001-10-01), None
patent: WO 02/054188 (2002-07-01), None
patent: WO 03/005249 (2003-01-01), None
Backofen, R. et al., “Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets”, (Feb. 1999), 17pages.
Raynor, W., The International Dictionary of Artificial Intelligence, (1999), p. 63 and cover only.
Shaheen, M. et al., “Remote Laboratory Experimentation”,Proceedings of the American Control Conference, Philadelphia, Pennsylvania, (Jun. 1998), pp. 1326-1329.
Thayer, A. “Combinatorial Chemistry Becoming Core Technology at Drug Discovery Companies”,Chem Eng. News, (Feb. 12, 1996), pp. 57-64.
Umetri Ab, MODDE 4-0 Users Guide, Copyright 1992-1997, pp. 1-1 to 14-2 (229 pages), “Graphical Software for Design of Experiments”.
Zou, J. et al., “Statistical Theory of Combinatorial Libraries of Folding Proteins: Energetic Discrimination of a Target Structure”,J Mol Biol, vol. 296 (2000), pp. 281-294.
Arita et al., “Improvement of a Row Displacement Algorithm For Sparse Table Compression”, IEEE 1996 1730-1735.
Briceno et al., Science 270, (1995) pp. 273-275.
Bayard et al. “Connecting Scientific Programs and Data Using Object Databases”, IEEE Data Engineering Bulletin, vol. 16, 1993, (6 pages).
Berard et al., “Scientific Data Management in the Environmental Molecular Sciences Laboratory”, Proc. 14th IEEE Symposium on Mass Storage Systems, 1995 (17 pages).
Chen et al., “An Overview of the Object Protocol Model (OPM) and the OPM Data Management Tools”, Information Systems, vol. 20, 1995, pp. 393-418.
Ioannidis et al., “Conceptual Schemas: Multi-Faceted Tools for Desktop Scientific Experiment Management”, Int. J. Cooperative Information Systems, vol. 1, 1992 (24 pages).
Ioannidis et al., “Desktop Experiment Management”, IEEE Data Eng. Bull., vol. 16, 1993, pp. 19-23.
Ioannidis et al., “FROG and TURTLE: Visual Bridges Between Files and Object-Oriented Data”, Proc. Of the 8th International Conference on Scientific and Statistical Database Management, Stockholm, Sweden, 1996, pp. 76-85.
Ioannidis et al., “ZOO: A Desktop Experiment Management Environment”, Proceedings of the 22nd VLDB Conference Mumbai(Bombay), India, 1996 (12 pages).
Keller et al., “Metadata: The Foundation of Effective Experiment Management”, Proc. of the 1st IEEE Metadata Conference, Silver Springs, Maryland, USA, 1996 (12 pages).
Kling “First Steps Toward a Common Language for Analytical Data”, Analytical Chemistry News & Features, Sep. 1, 1999, pp. 621A-623A.
Maier et al., “Bambi Meets Godzilla: Object Databases for Scientific Computing”, Proc. of the 7th International Working conference on Scientific and Statistical Database Management, IEEE Computer Society: Washington D.C., USA, 1994, pp. 176-184.
Medeiros et al., “WASA: A Workflow-Based Architecture to Support Scientific Database Applications”, Proc. 6th International Conference on Database and Expert Systems Applications, 1995 (20 pages).
Pirklbauer et al., “Object-Oriented and Conventional Process Automated Systems”, 1994, 6 pages.
Thayer, Chem. Eng. News, Feb. 12, 1996 pp. 57-64.
Xiang et al., Science 268, (1995) 1738-1740.
Corkan et al., “Experiment Manager Software for an Automated Chemistry workstation, Including a Scheduler for Parallel Experimentation,” Chemometrics and Intelligent Lab. Sys., vol. 17, 1992, pp. 47-74.
Thayer, “Bioinformatics for the Masses, (http://pubs.acs.org/hotartcl/cenear/000207/7806bus1.html)”, Accessed on Mar. 22, 2000, Business, 2000, vol. 78(6), pp. 19-32.
McFarland et al., “Approaches for Rapid Materials Discovery Using Combinatorial Methods,” Matrice Technologies, Ltd., vol. 13.3, 1998, pp. 107-120.
Cargill et al., “Automated Combinatorial Chemistry on Solid Phase,” LRA, vol. 8, 1996, pp. 139-148.
Grigoriadis et al., “A Relational System for Managing High-Throughput Screening Data,” Application Note, vol. Apr. 1997, pp. 53-54.
Network Science, “Introducing MDL Screen,” (www.netsci.org/Schience/Screening/feature03.html), Website, Nov. 15, 2002, 4 pages.
MDL Information Syst., “MDL Screen 1.3 Closes Final Gap in HTS Workflow,” 1998, 8 pages.
Afferent Systems Inc., “Afferent Analytical,” website, Jan. 28, 1999, 1 page.
Afferent Systems Inc., “What's New? IRORI and Afferent Enter Into Combinatorial chemistry Collaboration Agreement,” website, Jul. 3, 1999, 2 pages.
U.S. Appl. No. 09/174,856, filed Oct. 19, 1998, Lacy et al.
U.S. Appl. No. 11/325,267, filed Jan. 3, 2006, Falcioni et al.
U.S. Appl. No. 12/482,353, filed Jun. 10, 2009, Barstow.
Barr, R.S. et al., “Designing and reporting on computational experiments with heuristic methods”, Journal of Heuristics Kluwer Academic Publishers Netherlands, vol. 1, No. 1 (Sep. 1995), pp. 9-32.

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

User-configurable generic experiment class for combinatorial... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with User-configurable generic experiment class for combinatorial..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and User-configurable generic experiment class for combinatorial... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-2751719

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.