Use of restriction endonuclease sequences for cleaving phosphoro

Chemistry: molecular biology and microbiology – Micro-organism – tissue cell culture or enzyme using process... – Preparing compound containing saccharide radical

Patent

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

435 9141, 435 9151, 536 253, 536 254, C12P 1934, C12N 1566, C07H 2100, C07H 2102

Patent

active

056521260

ABSTRACT:
The present invention relates to methods of cleaving phosphorothioate oligonucleotides. In particular, it relates to the use of certain restriction endonucleases to cleave phosphorothioate oligonucleotides which contain restriction endonuclease recognition sequences. These restriction sequences can be used to facilitate the cleavage of relatively cleavage resistant phosphorothioate oligonucleotides thus facilitating their separation and purification after synthesis.

REFERENCES:
patent: 4683195 (1987-07-01), Mullis et al.
patent: 4683202 (1987-07-01), Mullis
patent: 4786600 (1988-11-01), Kramer et al.
patent: 4800159 (1989-01-01), Mullis et al.
patent: 4851330 (1989-07-01), Kohne
patent: 5030557 (1991-07-01), Hogan et al.
patent: 5212295 (1993-05-01), Cook
patent: 5264423 (1993-11-01), Cohen et al.
patent: 5276019 (1994-01-01), Cohen et al.
patent: 5286717 (1994-02-01), Cohen et al.
patent: 5288611 (1994-02-01), Kohne
Olsen, et al., "Interaction of Restriction Endonucleases With Phosphorothioate-Containing DNA", Nucleosides & Nucleotides, 10(1-3):665-667 (1991).
Bartlett, et al. Stereochemical course of polymerization catalyzed by avian myeloblastosis virus reverse transcriptase. The Journal of Biological Chemistry. 257:8879-8884. U.S.A. (1982).
Bergot, et al. The manufacture and molecular characterization of phosphorothioate deoxynucleotides for use as antisense therapeutics in human clinical trials. Nucleic Acids Symposium Series. 29:57. Oxford University Press, Oxford, U.K. (1993).
Biggin, et al. Buffer gradient gels and S label as an aid to rapid DNA sequence determination. Proc. Natl. Acad. Sci. USA. 80:3963-3965. Biochemistry, (1983).
Brody, et al. Stereochemical course of nucleotidyl transfer catalyzed by bacteriophage T7 induced DNA polymerase. Biochemistry. 21:2570-2572. (1982).
Brown, T., et al. Modern machine-aided methods of oligodeoxyribonucleotidesynthesis. Oligonucleotides and Analogues: A Practical Approach. 1-25. IRL Press, Oxford, U.K. (1991).
Burgers, et al. A study of the mechanism of DNA polymerase I from Escherichia coli with diasteromeric phosphorothioate analogs of deoxyadenosine triphosphate. The Journal of Biological Chemistry. 254:6889-6893. U.S.A. (1979).
Dyatkina, et al. Nucleic Acids Research. 238. Oxford University Press, Oxford England (1991).
Eckstein, et al. Nucleotide Phosphorothioates. 54:367-402. Ann. Rev. Biochem., (1985).
Leiter, et al. Inhibition of influenza virus replication by phosphorothioate oligodeoxynucleotides. Proc. Nat'l Acad. Sci. USA. 87:3430-3434. Microbiology, (1990).
Matsukara, et al. Synthesis of phosphorothioate analogues of oligodeoxyribonucleotides and their antiviral activity against human immunodeficiency virus (HIV). Gene 72:343-347. (1988).
McGilvery, R., et al. Changes in the Genetic Message. Biochemistry. A functional approach. 3:125-126. W.B. Saunders Company, Philadelphia, London, Toronto, Mexico City, Rio de Janeiro, Syndey. Tokyo, (1983).
Mullis, et al. Specific synthesis of DNA in vitro via a. polymerase-catalyzed chain reaction. Methods in Enzymology. 155:335-350. Academy Press, Inc. (1987).
Murakawa, et al. Laboratory Methods. Direct detection of HIV-1 RNA from AIDS and ARC patient samples. DNA. 7:287-295. Mary Ann Liebert, Inc., Publishers (1988).
Romaniuk, et al. A study of the mechanism of T4 DNA polymerase with diaseromeric phosphorothioate analogues of deoxyadenosine triphosphate. The Journal of Biological Chemistry. 257:7684-7688. U.S.A. (1982).
Sinha, D. Large-Scale oligonucleotide synthesis using the solid-phase approach. Methods in Molecular Biology: Protocols for Oligonucleotides and Analogs. 20:437-463. Humana Press Inc., Totowa, N.J. (1993).
Stec, W., et al. Novel route to oligo(deoxyribonucleotide phosphorothioates). Stereocontrolled synthesis of P-chiral oligo(deoxyribonucleotide phosphorothioates). Nucleic Acids Research. 19:5883-5888. Oxford University Press, Oxford, U.K. (1991).
Stec, W., et al. Automated solid-phase synthesis, separation, and stereochemistry of phosphorothioate analogues of oligodeoxyribonucleotides. J. Am. Chem. Soc. 106:6077-6079. American Chemical Society, (1984).
Taylor, et al. The use of phosphorotioate-modified DNA in restriction enzyme reactions to prepare nicked DNA. Nucleic Acids Research. 13:8749-8764. IRL Press Limited, Oxford, England (1985).
Degradation and modification of nucleic acids. Chapter 4, Biochemistry of the Nucleic Acids. 97-108, (Adams, et al., ed. 11th ed. 1992).
Vosberg and Eckstein, "Effect of deoxynucleoside phosphorothioates incorporated in DNA on cleavage by restriction enzymes", J. Biol. Chem. 257:6595-6599 Jun. 10, 1982.

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Use of restriction endonuclease sequences for cleaving phosphoro does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Use of restriction endonuclease sequences for cleaving phosphoro, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Use of restriction endonuclease sequences for cleaving phosphoro will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-632833

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.