Chemistry: molecular biology and microbiology – Animal cell – per se ; composition thereof; process of... – Method of regulating cell metabolism or physiology
Patent
1997-03-26
2000-10-24
LeGuyander, John L.
Chemistry: molecular biology and microbiology
Animal cell, per se ; composition thereof; process of...
Method of regulating cell metabolism or physiology
435 6, 536 243, 536 2431, 536 2433, 536 245, C12Q 168, C07H 2104
Patent
active
061366013
ABSTRACT:
A method for introducing a site-specific mutation into a target polynucleotide sequence is presented. The method involves the use of an oligonucleotide capable of binding to the target sequence, either by triplex formation (mediated by Hoogsteen, reverse Hoogsteen or equivalent base pairing) or by Watson/Crick base pairing (in the presence of a recombinase enzyme). The oligonucleotide of the invention is modified by the covalent attachment of one or more electrophilic groups. When a modified oligonucleotide is bound to its target sequence, the electrophilic group is able to interact with a nearby nucleotide in the target sequence, causing a modification to the nucleotide that results in a change in nucleotide sequence. Compositions used in the practice of the method are also disclosed.
REFERENCES:
patent: 3598807 (1971-08-01), Nakayama et al.
patent: 3962211 (1976-06-01), Townsend et al.
patent: 4123610 (1978-10-01), Summerton et al.
patent: 4582789 (1986-04-01), Sheldon, III et al.
patent: 4599303 (1986-07-01), Yabusaki et al.
patent: 4711955 (1987-12-01), Ward et al.
patent: 4766062 (1988-08-01), Diamond et al.
patent: 4795700 (1989-01-01), Dervan et al.
patent: 4835263 (1989-05-01), Nguyen et al.
patent: 4837311 (1989-06-01), Tam et al.
patent: 4849513 (1989-07-01), Smith et al.
patent: 4888274 (1989-12-01), Radding et al.
patent: 4910300 (1990-03-01), Urdea et al.
patent: 4948882 (1990-08-01), Ruth
patent: 5015733 (1991-05-01), Smith et al.
patent: 5176996 (1993-01-01), Hogan et al.
patent: 5422251 (1995-06-01), Fresco
patent: 5541313 (1996-07-01), Ruth
patent: 5574142 (1996-11-01), Meyer, Jr. et al.
patent: 5776744 (1998-07-01), Glazer et al.
M. Cooney et al. Scienie 241:456-9 '88.
L. Pauling C&E News 24(10) 1375-6 '46.
R. Dickenson et al, The Struct. & Action of Proteins, Benjamin/Cummings Publ. Co., Menlo Park, CA '69, p. 68.
J. Goodchild Bioconj. Chem. 1(3) 166-87 '90.
Dialog Abstract to EP 214,908, provided as Derwent World Patent Index Acc No. 87-074186/198711.
Averbeck, D., "Relationship between lesions photoinduced by mono- and bi-functional furocoumarins in DNA and genotoxic effects in diploid yeast" Mutation Res. 151:217-233 (1985).
Giovannangeli et al., "Oligodeoxynucleotide-directed photo-induced cross-linking of HIV proviral DNA via triple-helix formation" Nucleic Acids Res. 20(16):4275-4281 (1992).
Grigoriev et al., "Inhibition of gene expression by triple helix-directed DNA cross-linking at specific sites" Proc. Natl. Acad. Sci. USA 90:3501-3505 (1993).
Havre et al., "Targeted mutagenesis of DNA using triple helix-forming oligonucleotides linked to psoralen" Proc. Natl. Acad. Sci. USA 90:7879-7883 (1993).
Takasugi et al., "Sequence-specific photo-induced cross-linking of the two strands of double-helical DNA by a psoralen covalently linked to a triple helix-forming oligonucleotide" Proc. Natl. Acad. Sci. USA 88:5602-5606 (1991).
"Antisense Update: Keep your chin up" Genesis Report (Jun. 1993) 2(4) (Genesis Group Associates, Inc., 1993) (Abstract).
Agrawal et al., "Site specific functionalization of oligonucleotides for attaching two different reporter groups" Nucleic Acids Res. (1990) 18(18):5419-5423.
Brown, T. et al., "Modern machine-aided methods of oligodeoxyribonucleotide synthesis" in Oligonucleotides and Analogues: A practical approach ed. F. Eckstein, IRL Press, Oxford, 1991, pp. 1-24.
Crooke, "Editorial. Progress in evaluation of the potential of antisense technology" Antisense Research and Development (1994) 4:145-146.
Kessler, Nonradioactive Labeling and Detection of Biomolecules, C. Kessler, ed., Springer-Verlag, Berlin, 1992, pp. 13-14. (Title page also included herewith).
Maher, "DNA triple-helix formation: An approach to artificial gene repressors" BioEssays (1992) 14(12):807-815.
Matthews et al., "Review. Analytical strategies for the use of DNA probes" Analyt. Biochem. (1988) 169:1-25.
Pieles et al., "Preparation of a novel psoralen containing deoxyadenosine building block for the facile solid phase synthesis of psoralen-modified oligonucleotides for a sequence specific crosslink to a given target sequence" Nucleic Acids Res. (1989) 17(22):8967-8978.
Podyminogen et al., "Sequence specific covalent modification of DNA by cross-linking oligonucleotides. Catalysis by RecA and implication for the mechanism of synaptic joint formation" Biochemistry (1995) 34:13098-13108.
Praseuth et al. "Sequence-specific binding and photocrosslinking of .alpha. and .beta. oligodeoxynucleotides to the major groove of DNA via triple-helix formation" Proc. Natl. Acad. Sci. USA (1988) 85:1349-1353.
Sats et al., "Complementary addressed elimination of Ela-Sequences of SA7 simian adenovirus oncogen from ring-shaped single-strand DNA of M13 recombinant phages" Bioorganicheskaya khimiya (1988) 14(9):1188-1196. (Translation included herewith).
Singh et al., "Synthesis, characterization and conformational studies of the oligonucleotide 5'-CGCYCGGCATG-3' containing the modified base 1,N.sup.2 -propano-2' deoxyguanosine" Abstr. Pap. Am. Chem. Soc. (Apr. 1991) 201 (1-2). Abstract No. 364.
Stull and Szoka, Jr., "Antigene, ribozyme and aptamer nucleic acid drugs: Progress and prospects" Pharmaceutical Research (1995) 12(4):465-483.
Yamana et al., "Synthesis and interactive properties of an oligonucleotide with anthraquinone at the sugar fragment" Bioconjugate Chem. (1990) 1(5):319-324.
Arrand, "Preparation of Nucleic Acid Probes" Nucleic Acid Hybridisation, A Practical Approach, Hames and Higgins, eds., IRL Press, pp. 17-45 (1985).
Baker, B. R., "Design of Active-Site Directed Irreversible Enzyme Inhibitors" John Wiley and Sons, Inc., New York (1967).
Bergstrom, D., et al., "C-5 substituted pyrimidine nucleosides. 2. Synthesis via olefin coupling to organopalladium intermediates derived from uridine and 2'-deoxyuridine" J. Amer. Chem. Soc. vol. 100, No. 26, pp. 8106-8112 (1978).
Bigge, C., et al., "Palladium-catalyzed coupling reactions of uracil nucleosides and nucleotides" J. Amer. Chem. Soc. vol. 102, No. 6, pp. 2033-2038 (1980).
Blake, et al., "Hybridization arrest of globin synthesis in rabbit reticulocyte lysates and cells by oligodeoxyribonucleoside methylphosphonates" Biochemistry, vol. 24, pp. 6139-6145 (1985).
Bolli M et al., "Watson-Crick base-pairing properties of bicyclo-DNA" Nucleic Acids Res. 24: 4660-4667 (1996).
Busso, Mariano, "Nucleotide Dimers Suppress HIV Expression In Vitro" AIDS Research and Human Retroviruses, vol. 4, No. 6, pp. 449-455 (1988).
Calabresi P and Chabner BA, "Chemotherapy of Neoplastic Diseases" The Pharmacological Basis of Therapeutics, 8th Ed. (Gilman et al., eds.) Pergamon Press, New York, 1990, pp. 1202-1263.
Camerini-Otero, Rafael D. et al., "Method of Forming three Stranded DNA" Washington D.C.,: (U.S.) National Institutes of Health, Bethesda, Maryland. Nov. 9, 1990 (PB91-145581).
Chatterjee, Moneesh, et al., "Inducible Alkylation of DNA using an Oligonucleotide-Quinone Conjugate" J. Am. Chem. Soc., 1990, vol. 112, pp. 6397-6399.
Cheng, Suzanne, et al., "Use of psoralen-modified oligonucleotides to trap three stranded RecA-DNA complexes and repair of these cross-linked complexes by ABC excinuclease." J. Biol. Chem. 263:15,110-15,117 (1988).
Dale, R. et al., "The synthesis and enzymatic polymerization of nucleotides containing mercury: Potential tools for Nucleic Acid sequencing and structural analysis" Proc. Natl. Acad. Sci. USA vol. 70, No. 8, pp. 2238-2242 (1973).
Dale, R. et al., "Direct covalent mercuration of nucleotides and polynucleotides" Biochemistry vol. 14, No. 11, pp. 2447-2457 (1975).
De Clercq, E. et al., "Antiviral activity of 5-[(methylthio)methyl]-2'-deoxyuridine and other 5-substituted 2'-deoxyuridines." Biochem. Pharmacol. 28:3249-3254 (1979); Chemical Abstracts 92: 174218s (1980).
Demidov VV et al., "Kinetics and mechanism of polyamide (`peptide`) nucleic acid binding to duplex DNA" Proc. Natl. Acad. Sci. USA 92:2637-2641 (1995).
Elsner H et al., "Photochemical crosslinking of protein and DNA in chromatin" Anal. Biochem. 149:575-581 (1985).
Fieser et al., "Reagents for Organic Synthesis" John Wiley and Sons, New
Gall Alexander A.
Gamper Howard B.
Kutyavin Igor V.
Meyer, Jr. Rich B.
Epoch Pharmaceuticals, Inc.
LeGuyander John L.
LandOfFree
Targeted mutagenesis in living cells using modified oligonucleot does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Targeted mutagenesis in living cells using modified oligonucleot, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Targeted mutagenesis in living cells using modified oligonucleot will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-1962485