Targeted gene discovery

Drug – bio-affecting and body treating compositions – Whole live micro-organism – cell – or virus containing – Genetically modified micro-organism – cell – or virus

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424 936, 4241841, 4241991, 435 6, 435235, 435243, 4352523, A01N 6300, A61K 3900, C12Q 168, C12N 120

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active

061398330

ABSTRACT:
The present invention describes a comprehensive system for gene discovery using retrovirus that have been engineered to exhibit increased accessibility to genomic DNA, or to mutate and identify the chromosomal target sequences of DNA binding proteins. The strategy employs the combination of retroviral integrase/DNA binding protein fusion constructs and gene-trapping methodologies. This novel technology provides the ability to establish proviral integration at any location within the genome. In addition, it allows for the generation of a collection of eukaryotic cells in which each cell contains a mutation in a target gene or sequence for a known DNA binding protein which also allow for rapid in vivo functional analysis. Sequence information obtained for genes identified using the described methods identify a collection of eukaryotic genes related by, or directly or indirectly regulated by, a given DNA binding protein.

REFERENCES:
patent: 4683195 (1987-07-01), Mullis et al.
patent: 4683202 (1987-07-01), Mullis
patent: 4800159 (1989-01-01), Mullis et al.
patent: 4889818 (1989-12-01), Gelfand et al.
patent: 4965188 (1990-10-01), Mullis et al.
patent: 5023171 (1991-06-01), Ho et al.
patent: 5066584 (1991-11-01), Gyllensten et al.
patent: 5075216 (1991-12-01), Innis et al.
patent: 5079352 (1992-01-01), Gelfand et al.
patent: 5091310 (1992-02-01), Innis
patent: 5104792 (1992-04-01), Silver et al.
patent: 5464764 (1995-11-01), Capecchi et al.
patent: 5830707 (1998-11-01), Bushman
M. Barinaga, Knockout Mice: Round Two, Science, vol. 265, pp. 26-28, Jul. 1994.
Mullins et al. Perspectives Series: Molecular Medicine in Genetically Engineered Animals: Transgenesis in the Rat and Larger Mammals. J. Clinical Investigation. vol. 98. No. 11, Supplement, pp. S37-S40, 1996.
Moreadith et al. Gene targeting in embryonic stem cells the new physiology and metabolism. J. Mol. Med. vol. 75, pp. 208-216, 1997.
Bushman et al., 1997, "Tethering Human Immunodeficiency Virus Type 1 Preintegration Complexes to Target DNA Promotes Integration at Nearby Sites", Journal of Virology, p. 458-464.
Goulaouic et al., 1996, "Directed Integration of Viral DNA Medicated by Fusion Proteins Consisting of Human Immunodeficiency Virus Type 1 Integrase and Escherichia coli LexA Protein", Journal of Virology, p. 37-46.
Miller et al., 1995, "Target DNA capture by HIV-1 integration complexes", Current Biology, vol. 5, No. 9, pp. 1047-1056.
Akam, 1987, "The molecular basis for metameric pattern in the Drosophila embryo", Development 101:1-22.
Akagi et al., 1997, "Cre-mediated somatic site-specific recombination in mice", Nucleic Acids Res 25:1766-1773.
Allen et al., 1988, "Transgenes as probes for active chromosomal domains in mouse development", Nature 333:852-855.
Barinaga, 1994, "Knockout Mice: Round Two", Science 265:26-28.
Barnes and Adcock, 1993, "Anti-inflammatory actions of steroids: molecular mechanisms", TiPS Reviews 14:436-441.
Bellen et al., 1989, "P-element-mediated enhancer detection: a versatile method to study development in Drosophila", Genes & Development 3:1288-1300.
Bier et al., 1989, "Searching for pattern and mutation in the Drosophila genome with a P-lacZ vector", Genes & Development 3:1273-1287.
Bosselman et al., 1987, "Replication-Defective chimeric Helper Proviruses and Factors Affecting Generation of Competent Virus: Expression of Moloney Murine Leukemia Virus Structural Genes via the Metallothionein Promoter", Molec. Cell. Biol. 7:1797-1806.
Botsford et al., 1992, "Cyclic AMP in Prokaryotes", Microbiol Rev 56:100-122.
Brenner et al., 1989, "Analysis of mammalian cell genetic regulation in situ by using retrovirus-derived "portable exons" carrying the Escherichia coli lacZ gene", Proc Natl Acad Sci. USA 86:5517-5521.
Burke et al., 1995, "Hox genes and the evolution of vertebrate axial morphology", Development, 121:333-346.
Bushman, 1994, "Tethering human immunodeficiency virus 1 integrase to a DNA site directs integration to nearby sequences", Proc Natl. Acad. Sci. USA 91:9233-9237.
Chakraborty et al., 1993, "Synthetic retrotransposon vectors for gene therapy", FASEB Journal 7:971-977.
Chen et al., 1994, "Transcriptional enhancer factor 1 disruption by a retroviral gene trap leads to heart defects and embryonic lethality in mice", Genes & Development 8:2293-2301.
Chen et al., 1994, "Large Exon Size Does Not Limit Splicing In Vivo", Molecular and Cellular Biology 14:2140-2146.
Coulondre et al., 1977, "Genetic Studies of the lac Repressor", J Mol Biol 117:577-606.
Dadoune, 1994, Bull Assoc Anat, 78:33-40.
Danos et al., 1988, "Safe and efficient generation of recombinant retroviruses with amphotrophic and ecotropic host ranges", Proc. Natl. Acad. Sci. USA 85:6460-6464.
Erlich, H.A., PCR Technology: Principals and Applications of DNA Amplification Stockton Press (1989).
Friedrich et al., 1993, "Insertional Mutagenesis by Retroviruses and Promoter Traps in Embryonic Stem Cells", Methods in Enzymology 225:681-701.
Friedrich et al., 1991, "Promoter traps in embryonic stem cells: a genetic screen to identify and mutate developmental genes in mice", Genes & Development 5:1513-1523.
Frohman et al., 1988, "Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer", Proc Natl. Acad. Sci. USA 85:8998-9002.
Furth et al., 1994, "Temporal control of gene expression in transgenic mice by a tetracycline-responsive promoter", Proc Natl. Acad. Sci. USA 91:9302-9306.
Gasca et al., 1995, "Characterization of a Gene Trap Insertion Into a Novel Gene, cordon-bleu, Expressed in Axial Structures of the Gastrulating Mouse Embryo", Developmental Genetics 17:141-154.
Goff, 1987, "Insertional Mutagenesis to Isolate Genes", Methods in Enzymology, 151:489-502.
Gossler et al., 1989, "Mouse Embryonic Stem Cells and Reporter Constructs to Detect Developmentally Regulated Genes", Science 244:463-465.
Goulaouic et al., 1996, "Directed Intergration of Viral DNA Mediated by Fusion Proteins Consisting of Human Immunodeficiency Virus Type 1 Integrase and Escherichia coli LexA Protein", J. Virol. 70:37-46.
Graham et al., 1991, "Manipulation of Adenovirus Vectors", Methods Mol. Biol. 7:109-128.
Han et al., 1997, "Activation of the transcription factor MEF2C by the MAP kinase p38 in inflammation", Nature 386:296-299.
Helene et al., 1992, "Control of Gene Expression by Triple Helix-Forming Oligonucleotides", Annals N.Y. Acad. Sci. 660:27-36.
Helene, 1991, "The anti-gene strategy: control of gene expression by triplex-forming-oligonucleotides", Anticancer Drug Des. 6:569-584.
Hope, 1991, "`Promoter trapping`" in Caenorhabditis elegans, Development 113:399-408.
Houghten et al., 1991, "Generation and use of synthetic peptide combinatorial libraries for basic research and drug discovery", Nature 354:84-86.
Ingraham et al., 1990, "A Family of Pou-Domain and PIT-1 Tissue-Specific Transcription Factors in Pituitary and Neuroengocrine Development", Annu Rev Physiol 52:773-791.
Innis et al., PCR Protocols: A Guide to Methods and Applications, Academic Press (1990).
Katz et al., 1996, "Targeting of Retroviral Integrase by Fusion to a Heterologous DNA Binding Domain: In Vitro Activities and Incorporation of a Fusion Protein into Viral Particles", Virology 217:178-190.
Kerr et al., 1989, "Transcriptionally Defective Retroviruses Containing lacZ for the In Situ Detection of Endogenous Genes and Developmentally Regulated Chromatin", Cold Spring Harbor Symposia on Quantitative Biology, LIV:767-776.
Khan et al., 1990, "Retroviral integrase domains: DNA binding and the recognition of LTR sequences", Nucl Acids Res. 19:851-860.
Kirchner et al., 1995, "Requirement of RNA Polymerase III Transcription Factors for in Vitro Position-Specific Integration of a Retroviruslike Element", Science 267:1488-1491.
Kozak, 1989, "The Scanning Model for Translation: An Update", Journal of Cell Biology 108:229-241.
Kulkosky et al., 1995, "Activities and Substrate Specificity of the Evolutionarily Conserved Central Domain of Retroviral Integrase", Virology 206:448-456.
Lam, K.S. et al., 1991, "A new type of synt

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