Target-dependent reactions using structure-bridging...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

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C536S023100, C536S024300

Reexamination Certificate

active

07101672

ABSTRACT:
The present invention relates to methods and compositions for analyzing nucleic acids. In particular, the present invention provides methods and compositions for the detection and characterization of nucleic acids and sequence changes. The methods of the present invention permit the detection and/or identification of genetic polymorphism such as those associated with human disease and permit the identification of pathogens (e.g., viral and bacterial strain identification).

REFERENCES:
patent: 5202231 (1993-04-01), Drmanac et al.
patent: 5422253 (1995-06-01), Dahlberg et al.
patent: 5427930 (1995-06-01), Birkenmeyer et al.
patent: 5429807 (1995-07-01), Matson et al.
patent: 5436327 (1995-07-01), Southern et al.
patent: 5492806 (1996-02-01), Drmanac et al.
patent: 5494810 (1996-02-01), Barany et al.
patent: 5510270 (1996-04-01), Fodor et al.
patent: 5599695 (1997-02-01), Pease et al.
patent: 5656744 (1997-08-01), Arnold, Jr. et al.
patent: 6709815 (2004-03-01), Dong et al.
patent: WO 95/15267 (1995-06-01), None
patent: WO 96/04374 (1996-02-01), None
patent: WO 97/27214 (1997-07-01), None
patent: WO 98/23774 (1998-06-01), None
Abrams et al., “Comprehensive Detection of Single Base Changes in Human Genomic DNA Using Denaturing Gradient Gel Electrophoresis and a GC Clamp,”Genomics7:463-475 [1990].
Altamirano et al., “Identification of Hepatitis C Virus Genotypes among Hospitalized Patients in British Columbia, Canada,”J. Infect. Dis. 171:1034-1038 [1995].
Bains and Smith, “A Novel Method for Nucleic Acid Sequence Determination,”J. Theor. Biol. 135:303-307 [1988].
Banerjee et al., “inhA, a Gene Encoding a Target for Isoniazid and Ethionamide inMycobacterium tuberculosis,” Science263:227-230 [1994].
Barany, “The Ligase Chain Reaction in a PCR World,”PCR Meth. App. 1:5-16 [1991].
Barlow and Lehrach, “Genetics by gel electrophoresis: the impact of pulsed field gel electrophoresis on mammalian genetics,”Trends Genet. 3:167-171 [1987].
Bidou et al., “In vivo HIV-1 frameshifting efficiency is directly related to the stability of the stem-loop stimulatory signal,”RNA3:1153-1158 [1997].
Borrensen et al., “Constant denaturant gel electrophoresis as a rapid screening technique for p53 mutations,”Proc. Natl. Acad. Sci. USA88:8405-8409 [1991].
Brow et al., “Differentiation of Bacterial 16S rRNA Genes and Intergenic Regions andMycobacterium tuberculosis katGGenes by Structure-Specific Endonuclease Cleavage,”J. Clin. Microbiol. 34:3129-3137 [1996].
Chee et al., “Accessing Genetic Information with High-Density DNA Arrays,”Science274:610-614 [1996].
Cload and Schepartz, “Polyether Tethered Oligonucleotide Probes,”J. Am. Chem. Soc. 113:6324-6326 [1991].
Cockerill, III et al., “Rapid Identification of a Point Mutation of theMycobacterium tuberculosisCatalase-Peroxidase (katG) Gene Associated with Isoniazid Resistance,”J. Infect. Dis. 171:240-245 [1995].
Comptonin PCR Protocols, Innis et al. (Eds.), [1990], pp. 39-45.
Conner, “Detection of sickle cell βs-globin allele by hybridization with synthetic oligonucleotides,”Proc. Natl. Acad. Sci. 80:278-282 [1983].
Donnabella et al., “Isolation of the Gene for the β Subunit of RNA Polymerase from Rifampicin-resistantMycobacterium tuberculosisand Indentification of New Mutations,”Am. J. Respir. Dis. 11:639-643 [1994].
Doty et al., “Strand Separation and Specific Recombination in Deoxyribonucleic Acids: Physical Chemical Studies,”Proc. Natl. Acad. Sci. USA46:461 [1960].
Drmanac et al., “Sequencing of Megabase Plus DNA by Hybridization: Theory of the Method,”Genomics4:114-128 [1989].
Duckett et al., “The Structure of the Holliday Junction, and Its Resolution,”Cell55:79-89 [1988].
Eckstein and Lilley (eds.),Nucleic Acids and Molecular Biology, vol. 2, Springer-Verlag, Heidelberg [1988]. (This publication is not provided but is available upon request of the Examiner).
Fedorova et al., “The Influence of the Target Structure on the Efficiency of Alkylation of Single-Stranded DNA with the Reactive Derivatives of Antisense Oligonucleotides,”FEBS Lett. 302:47-50 [1992].
Fodor et al., “Light-Directed, Spatially Addressable Parallel Chemical Synthesis,”Science251:767-773 [1991].
Fodor et al., “Multiplexed biochemical assays with biological chips,”Nature364:555-556 [1993].
Francois et al., “Recognition and Cleavage of Hairpin Structures in Nucleic Acids by Oligodeoxynucleotides,”Nucleic Acids Research22(19):343-3950 [1994].
Frieden et al., “The Emergence of Drug-Resistant Tuberculosis in New York City,”New Engl. J. Med. 328:521-526 [1993].
Gamper et al., “Solution Hybridization of Crosslinkable DNA Oligonucleotides to Bacteriophage M13 DNA Oligonucleotides to Bacteriophage M13 DNA:Effect of Secondary Structure on Hybridization Kinetics and Equilibria,”J. Mol. Biol. 197:349-362 [1987].
Gaspin and Westhof, “An Interactive Framework for RNA Secondary Structure Prediction with a Dynamical Treatment of Constrains,”J. Mol. Biol. 254:163 [1995].
Gesteland and Atkins (eds.),The RNA World, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY [1993]. (This publication is not provided but is available upon request of the Examiner).
Girelli et al., “Hereditary Hyperferritinemia-Cataract Syndrome Caused by a 29-Base Pair Deletion in the Iron Responsive Element of Ferritin L-Subunit Gene,”Blood90:2084 [1997].
Godard et al., “Photochemically and Chemically Activatable Antisense Oligonucleotides: Comparison of Their Reactivities Towards DNA and RNA Targets,”Nuc. Acids Res. 22:4789-4795 [1994].
Gogos et al., “Detection of single base mismatches of thymine and cytosine residues by potassium permanganate and hydroxylamine in the presence of tetralkylammonium salts,”Nucl. Acids Res. 18:6807-6817 [1990].
Hanke et al., “RepetitiveAluElements form a Cruciform Structure that Regulates the Function of the Human CD8α T Cell-specific Enhancer,”J. Mol. Biol. 246:63 [1995].
Harrington and Lieber, “Functional domains within FEN-1 and RAD2 define a family of structure-specific endonucleases: implications for nucleotide excision repair,”Genes and Develop. 3:1344-1355 [1994].
Hayashi, “PCR-SSCP: A Simple and Sensitive Method for Detection of Mutations in the Genomic DNA,”PCR Meth. Appl. 1:34-38 [1991].
Heym et al., “Implications of multidrug resistance for the future of short0-course chemotherapy of tuberculosis: a molecular study,”Lancet344:293-298 [1994].
Hirao et al., “Most Compact Hairpin-Turn Structure Exerted by a Short DNA Fragment, d(GCGAAGC) in Solution: An Extraordinarily Stable Structure Resistant to Nucleases and Heat,”Nucleic Acids Res. 22(4):576-582 [1994].
Howe and Ares, “Intron self-complementarity enforces exon inclusion in a yeast pre-mRNA,”Proc. Natl. Acad. Sci. USA94:1246712472 [1997].
Hughes, “The Resurgence of tuberculosis.”Scrip Magazine, pp. 46-48 [May 1994].
Jacobs, Jr. et al., “Rapid Assessment of Drug Susceptibilities ofMycobacterium tuberculosisby Means of Luciferase Reporter Phages,”Science260:819-822 [1993].
Jacobs, Jr., “Multiple-Drug-Resistant Tuberculosis,”Clin. Infect. Dis. 19:1-8 [1994].
Jaeger et al., “Improved predictions of secondary structures for RNA,”Proc. Natl. Acad. Sci. USA86:7706-7710 [1989].
Jaeger et al., “Predicting Optimal and Suboptimal Secondary Structure for RNA,”Meth. Enzymol. 183:281-306 [1990].
Kaczorowski and Szybalski, “Co-Operativity of hexamer ligation,”Gene179:189-193 [1996].
Kanai et al., “HCV genotypes in chronic hepatitis C and response to interferon,”Lancet339:1543 [1992].
Kwok et al., “Effects of Primer—Template Mismatches on the Polymerase Chain Reac

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