Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical
Reexamination Certificate
2006-01-17
2006-01-17
Martinell, James (Department: 1634)
Data processing: measuring, calibrating, or testing
Measurement system in a specific environment
Biological or biochemical
C702S019000, C435S006120
Reexamination Certificate
active
06988040
ABSTRACT:
Methods, systems and computer software products are provided for determining genotype of a sample using a plurality of probes. In one preferred embodiment, a tentative genotype call is made based upon the relative allele signals. Pattern recognition is then used to validate the tentative call.
REFERENCES:
patent: 5858659 (1999-01-01), Sapolsky et al.
patent: 5928870 (1999-07-01), Lapidus et al.
patent: 6013449 (2000-01-01), Hacia et al.
patent: 6027880 (2000-02-01), Cronin et al.
patent: 6228575 (2001-05-01), Gingeras et al.
patent: 2002/0016680 (2002-02-01), Wang et al.
patent: 2002/0059326 (2002-05-01), Bernhart et al.
patent: 2002/0103804 (2002-08-01), Liu et al.
Rui Mei, Patricia C. Galipeau, Cynthia Prass, Anthony Berno, Ghassan Ghandour, Nila Patil, Roger K. Wolff, Mark S. Chee, Brian J. Reid, David J. Lockhart, Genome-Wide Detection of Allelic Imbalance Using Human SNPs and High-density DNA Arrays; Genome Research, pp. 1126-1137; 2000 by Cold Spring Harbor Laboratory Press ISSN 1088-9051/00; www.genome.org.
Kerstin Lindblad-Toh, David M. Tanenbaum, Mark J. Daly, Ellen Winchester, Weng-Onn Lui, Anuradha Villapakkam, Sasha E. Stanton, Catharina Larsson, Thomas J. Hudson, Bruce E. Johnson, Eric S. Lander and Matthew Meyerson; Loss-of-Heterozygosity Analysis of Small-Cell Lung Carcinomas Using Single-nucleotide Polymorphism Arrays; Nature Biotechnology, vol. 18, Sep. 2000; Technical Reports; pp. 1001-1005; 2000 Nature America Inc.; http://biotech.nature.com.
Marc K. Halushka, Jian-Bing Fan, Kimberly Bentley, Linda Hsie, Naiping Shen, Alan Weder, Richard Cooper, Robert Lipshutz & Aravinda Chakravarti; Patterns of Single-Nucleotide Polymorphisms in Candidate Genes for Blood-Pressure Homeostasis; Nature Genetics, vol. 22, Jul. 1999; pp. 239-247; 1999 Nature America Inc.—http://genetics.nature.com.
David G. Wang, Jian-Bing Fan, Chia-Jen Siao, Anthony Berno, Peter Young, Ron Sapolsky, Ghassan Ghandour, Nancy Perkins, Ellen Winchester, Jessica Spencer, Leonid Kruglyak, Lincoln Stein, Linda Hsie, Thodoros Topaloglou, Earl Hubbell, Elizabeth Robinson, Michael Mittmann, MacDonald S. Morris, Naiping Shen, Dan Kilburn, John Rioux, Chad Nusbaum, Steve Rozen, Thomas J. Hudson, Robert Lipshutz, Mark Chee, Eric S. Lander, Large-Scale Identification, Mapping, and Genotyping of Single-Nucleotide Polymorphisms in the Human Genome; SCIENCE—vol. 280—May 15, 1998; pp. 1077-1082; www.sciencemag.org.
Thomas R. Gingeras, Ghassan Ghandour, Eugene Wang, Anthony Berno, Peter M. Small, Francis Drobeniewski, David Alland, Edward Desmond, Mark Holodniy, and Jorg Drenxow; Simultaneous Genotyping and Species Identification Using Hybridization Pattern Recognition Analysis of Generic Mycobacterium DNA Arrays; Genome Research; 1998 by Cold Spring Harbor Laboratory PRess ISSN 1054-9803/98; www.genome.org; pp. 435-446.
Mei Rui
Webster Teresa
Affymetrix Inc.
Martinell James
McCarthy III William R.
McGonigle Philip L.
Shear Alan B.
LandOfFree
System, method, and computer software for genotyping... does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with System, method, and computer software for genotyping..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and System, method, and computer software for genotyping... will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-3560896