System, method and computer program for non-binary sequence...

Details System, method and computer program for non-binary sequence... System, method and computer program for non-binary sequence...

2007-08-28

2007-08-28

Brusca, John S. (Department: 1631)

Data processing: measuring, calibrating, or testing

Measurement system in a specific environment

Biological or biochemical

C702S019000

Reexamination Certificate

active

11378284

ABSTRACT:
A system and method for performing non-binary comparison of biological sequences includes a new measure ω0, which is a non-binary counting measure that is used in a stand alone module called VaSSA-1. This measure obtains substantially more information about sequences and comparisons between them than is gathered by conventional bioinformatics techniques.

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ACCELRYS, INC.—GCG Manual Version ,Version 10.3, 2002.
Almeida, J.S., et al., “Analysis of genomic sequences by Chaos Game Representation”, Bioinformatics, vol. 17, No. 5, p. 429-437, Oxford University Press, 2001.
Altschul, et al. (J. Mol. Biol. 215, p. 403-410, 1990).
Baxevanis, A.D., et al. Bioinformatics A Practical Guide to the Analysis of Genes and Proteins, Chapter 10—“Predictive Methods Using DNA Sequences” pp. 233-252, Wiley-Liss, Inc., 2001.
Vigna, S., et al., Alignment-free sequence comparison—a review, Bioinformatics, vol. 19, No. 4, p. 513-523, Oxford University Press, 2003.

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