System and method for transacting and manipulating a...

Details System and method for transacting and manipulating a... System and method for transacting and manipulating a...

2005-07-26

2005-07-26

Martinell, James (Department: 1634)

Data processing: measuring, calibrating, or testing

Measurement system in a specific environment

Biological or biochemical

C702S020000

Reexamination Certificate

active

06922638

ABSTRACT:
A system and method for transacting and manipulating a multi-sequence search using a biological data repository is described. A set of search query parameters specifying a plurality of sequence sets is received. Each sequence set encodes structured biological data values. A search queue is loaded with the search query parameters formatted into a structured database query for each sequence set assigned by search type. A search of the biological data repository is launched for each sequence set. Search results generated responsive to each such structured database query search are retrieved. The search results are received as sequence set information organized and reformatted for each sequence set and search type. A plurality of sequences are aligned using the search results based on one or more structured biological data values having matching characteristics. The aligned sequences are forwarded with matching characteristics indicators.

REFERENCES:
MPSRCH Suite of Database Searching Programs, Version 2.0, User/Reference Manual (IntelliGenetics, Inc. 1994).
“Oracle 9i Application Server,” A Technical White Paper [online], Nov. 2000 [retrieved on Jun. 17, 2003] Retrieved from the Internet:<URL: http://technet.oracle.com/products/ias/pdf/9ias_102.pdf>.
“Oricale 9i Application Server,” Overview Guide, Release 1.0.2. [online], Nov. 2000 [retrieved on Nov. 12, 2003]. Retrieved from the Internet:<URL: http://downoad.oracle.com/docs/cds/a97335_01.zip>.
Stabenau, Arne et al., “A guided Tour of Ensembl,” European Bioinformatics Institute, 2001, www.ensemble.org.
Altschul, Stephan, “Blast Overview,” 2001, www.ensemble.org.

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