System and method for searching data vectors such as genomes for

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435 6, G06F 1700, C12Q 168

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057242534

ABSTRACT:
A system searches a data vector as a genome for a template vector such as a DNA fragment. The system Exclusive ORs the template vector with a like size segment of the data vector, element by element, and sums the results of the Exclusive OR operations, whereby a zero sum indicates a match and a nonzero sum indicates a lack of match. Then, the system shifts the segment one element and repeats the Exclusive ORing and Summing steps for the shifted segment. Each of the elements is represented by a respective digital value, and the values are assigned such that the result of the Exclusive ORing for each combination of elements yields a value representing the degree of mismatch between the elements in the combination.

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patent: 4888695 (1989-12-01), Shiraishi et al.
patent: 4965725 (1990-10-01), Rutenberg
patent: 5379420 (1995-01-01), Ullner

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