Chemistry: molecular biology and microbiology – Micro-organism – tissue cell culture or enzyme using process... – Preparing compound containing saccharide radical
Reexamination Certificate
2007-06-12
2007-06-12
Lu, Frank (Department: 1634)
Chemistry: molecular biology and microbiology
Micro-organism, tissue cell culture or enzyme using process...
Preparing compound containing saccharide radical
C435S006120, C435S091100, C435S287200, C536S023100, C536S024300, C536S024330
Reexamination Certificate
active
10438639
ABSTRACT:
This invention relates to improved methods for sequencing and genotyping nucleic acid in a single molecule configuration. The method involves single molecule detection of fluorescent labeled PPi moieties released from NTPs as a polymerase extension product is created.
REFERENCES:
patent: 4793705 (1988-12-01), Shera
patent: 4863849 (1989-09-01), Melamede
patent: 4962037 (1990-10-01), Jett et al.
patent: 4979824 (1990-12-01), Mathies et al.
patent: 4996143 (1991-02-01), Heller et al.
patent: 5302509 (1994-04-01), Cheeseman
patent: 5397698 (1995-03-01), Goodman et al.
patent: 5405746 (1995-04-01), Uhlen
patent: 5405747 (1995-04-01), Jett et al.
patent: 5518900 (1996-05-01), Nikiforov et al.
patent: 5534424 (1996-07-01), Uhlen et al.
patent: 5547839 (1996-08-01), Dower et al.
patent: 5552270 (1996-09-01), Khrapko et al.
patent: 5599675 (1997-02-01), Brenner
patent: 5608063 (1997-03-01), Hobbs, Jr. et al.
patent: 5674743 (1997-10-01), Ulmer
patent: 5714330 (1998-02-01), Brenner et al.
patent: 5849478 (1998-12-01), Cashman
patent: 5858671 (1999-01-01), Jones
patent: 5863502 (1999-01-01), Southgate et al.
patent: 5942397 (1999-08-01), Tarlov et al.
patent: 5952174 (1999-09-01), Nikiforov et al.
patent: 6136543 (2000-10-01), Anazawa et al.
patent: 6232075 (2001-05-01), Williams
patent: 6255083 (2001-07-01), Williams
patent: 6287821 (2001-09-01), Shi et al.
patent: 6306607 (2001-10-01), Williams
patent: 6376181 (2002-04-01), Ramsey et al.
patent: 6482938 (2002-11-01), Hayashizaki et al.
patent: 6869764 (2005-03-01), Williams et al.
patent: WO 89/09283 (1989-10-01), None
patent: WO 90/01069 (1990-02-01), None
patent: WO 91/06678 (1991-05-01), None
patent: WO 93/23564 (1993-11-01), None
patent: WO 96/35779 (1996-11-01), None
patent: WO 98/13523 (1998-04-01), None
patent: WO 98/28440 (1998-07-01), None
patent: WO 98/44152 (1998-10-01), None
patent: WO 99/05315 (1999-02-01), None
Castro, et al.,Anal. Chem., 69:3915-3920 (1997).
Chen, et al.,Anal. Chem., 68:690-696 (1996).
Davis, et al.,GATA 8(1):1-7, (1991).
Eigen, et al.,Proc. Natl. Acad. Sci. USA, 91:5740-5747 (1994).
European Search Report 99967297.5-2402-US992985; Jan. 3, 2003.
Funatsu, et al.,Nature, 374:555-559 (1995).
Harju, L., et al., “Colorimetric Solid-Phase Minisequencing Assay Illustrated by Detection of α1-Antitrypsin Z Mutation,”Clin Chem. 39(11):2282-2287 (1993).
Hirschfeld,Applied Optics 15:12:2965-2966 (1976).
Ihalainen, J., et al., “Towards Automatic Detection of Point Mutations: Use of Scintillating Microplates in Solid-Phase Minisequencing,”Bio Techniques 16(5):938-943 (1994).
Ishikawa, et al.,Jpn. J. Appl. Phys., 33:1571-1576 (1994).
Lee, et al.,Anal. Chem., 66:4142-4149 (1994).
Metzker, M., et al.,Nucleic Acids Research, 22(20):4259-4267 (1994).
Moerner,Science, 277:1059-1060 (1997).
Nie, et al.,Science, 266:1018-1021 (1994).
Nie, et al.,Annu. Rev. Biophys. Biomol. Struct., 26:567-96 (1997).
Nie, et al.,Anal. Chem., 57:2849-2857 (1995).
Nyrén, et al., “Solid Phase DNA Minisequencing by an Enzymatic Luminometric Inorganic Pyrophosphate Detection Assay”,Analytical Biochemistry, 208:171-175 (1993).
Plakhotnik, T., et al.,Annu. Rev. Phys. Chem., 48:181-212 (1997).
Ronaghi, et al.,Science, 281:363-365 (1998).
Sato, et al.,J. Chem. Research(S):390-391 (1994).
Sauer, M., et al.,Chemical Physics Letters, 254:223-228 (1996).
Schmidt, et al.,Proc. Natl. Acad. Sci. USA, 93:2926-2929 (1996).
Tokunaga, et al.,Biochemical and Biophysical Research Communications, 235:47-53 (1997).
Vale, R., et al.,Nature, 380:451-453 (1996).
Yarbrough, et al.,The Journal of Biological Chemistry, 254(23):12069-12073 (1979).
Zhu, et al.,Cytometry, 28:206-211 (1997).
Yarbrough; Stacking Interactions in Fluorescent Nucleotide Analogs Containing 1-Aminoaphthalene-5-Sulfonate at the Phosphoryl Terminus; Journal of Biological Chemistry; 1980; pp. 9907-9911; vol. 255, No. 20; U.S.A.
Schlageck; Spectroscopic Techniques for Study of Phosphodiester Bond Formation byEscherichia coliRNA Polymerase; Journal of Biological Chemistry; 1979; pp. 12074-12077; vol. 254, No. 23; U.S.A.
Communication of a notice of opposition from the European Patent Offfice dated Dec. 27, 2006 in Application No. 99967297.5.
Li-Cor Inc.
Lu Frank
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