Chemistry: molecular biology and microbiology – Enzyme – proenzyme; compositions thereof; process for... – Hydrolase
Patent
1995-07-19
1998-11-17
Grimes, Eric
Chemistry: molecular biology and microbiology
Enzyme , proenzyme; compositions thereof; process for...
Hydrolase
435 681, 435 691, 4351723, 435221, 4352523, 43525231, 4353201, 536 232, C12P 2106, C12N 954, C12N 1557, C12N 1575
Patent
active
058375163
ABSTRACT:
The bacterial serine protease, subtilisin BPN', has been mutated so that it will efficiently and selectively cleave substrates containing basic residues. Combination mutants, where Asn 62 was changed to Asp, Gly 166 was changed to Asp (N62D/G166D), and optionally Tyr 104 was changed to Asp had a larger than additive shift in specificity toward substrates containing basic residues. Suitable substrates of the variant subtilisin were revealed by sorting a library of phage particles (substrate phage) containing five contiguous randomized residues. This method identified a particularly good substrate, Asn-Leu-Met-Arg-Lys- (SEQ ID NO: 35), that was selectively cleaved in the context of a fusion protein by the N62D/G166D subtilisin variant. A particularly good substrate for N62D/G166D/Y104D would be Asn-Arg-Met-Arg-Lys- (SEQ ID NO: 76). Accordingly, these variant subtilisin are useful for cleaving fusion proteins with basic substrate linkers and processing hormones or other proteins (in vitro or in vivo) that contain basic cleavage sites.
REFERENCES:
patent: 4760025 (1988-07-01), Estell et al.
patent: 5371008 (1994-12-01), Carter et al.
Bresnahan, P. A. et al., "Human fur gene encodes a yeast kex2-like endoprotease that cleaves pro-Checkthis-NGF in vivo" Journal of Cell Biology 111(6,Pt 2):2851-2859 (1990).
Carter et al., "Engineering Subtilisin BPN' for Site-Specific Proteolysis" Proteins: Struct. Funct., Genet. 6:240-248 (1989).
Creemers et al., "Modulation of Furin-Mediated Proprotein Processing Activity by Site-directed Mutagenesis" The Journal of Biological Chemistry 268(29):21826-21834 (1993).
Eder et al., "Hydrolysis of Small Peptide Substrates Parallels Binding of Chymotrypsin Inhibitor 2 for Mutants of Subtilisn BPN'" Federation of European Biochemical Societies 335(3):349-352 (1993).
Forsberg et al., "An Evaluation of Different Enzymatic Cleavage Methods of Recombination Fusion Proteins, Applied on Des (1-3) Insulin-Like Growth Factor I" Journal of Protein Chemistry 11(2):201-211 (1992).
Graf et al., "Electrostatic Complementarity Within the Substrate-Binding Pocket of Trypsin" Proc. Natl. Acad. Sci. 85:4961-4965 (1988).
Hosaka et al., "Arg-X-Lys/Arg-Arg Motif as a Signal for Precursor Cleavage Catalyzed by Furin within the Constitutive Secretory Pathway" Journal of Biological Chemistry 266(19):12127-12130 (1991).
Hwang et al., "Why ION Pair Reversal by Protein Engineering is Unlikely to Succeed" Nature 334:270-272 (1988).
Knauf et al., "Relationship of Effective Molecular Size to Systemic Clearance in Rats of Reconbinant Interleukin-2 Chemically Modified with Water Soluble Polymers" The Journal of Biological Chemistry 29(Oct. 15):15064-15070 (1988).
Kraut, Joseph, "Serine Protease: Structure and Mechanism of Catalysis" Ann. Rev. Biochem. 46:331-358 (1977).
Lipkind et al., "Molecular Modeling of the Substrate Specificity of Prohormone Convertases SPC2 and SPC3 " The Journal of Biological Chemistry 270(22):13277-13284 (1995).
Matthews et al., "A Survey of Furin Substrate Specificity Using Substrate Phage Display" Protein Science 3:1197-1205 (1994).
Matthews et al., "X-ray Crystallographic Study of Boronic Acid Adducts with Subtilisin BPN'(Novo)" Journal of Biological Chemistry 250(18):7120-7126 (1975).
McPhalen et al., "Structural Comparison of Two Serine Proteinase-Protein Inhibitor Complexes: Eglin-C-Subtilisin Carlsberg and CI-2-Subtilisin Novo" Biochemistry 27:6582-6598 (1988).
Philip et al., "Kinetics of Subtilisin and Thiolsubtilisin" Molecular and Cellular Biochemistry 51(5):5-32 (1983).
Poulos et al., "Polypeptide Halomethyl Ketones Bind to Serine Proteases as Analogs of the Tetrahedral Intermediate" The Journal of Biological Chemistry pp. 1097-1103 (1975).
Rheinnecker et al., "Engineering a Novel Specificity in Subtilisin BPN'" Biochemistry 32(5):1199-1203 (1993).
Robertus et al., "Subtilisin; a Stereochemical Mechanism Involving Transition-State Stabilization" Biochemistry 11:4293-4303 (1972).
Robertus et al., "An X-Ray Crystallographic Study of the Binder of Peptide Choloromethyl Ketone Inhibitiors to Subtilisin BPN'"Biochemistry 11(13):2439-2449 (1972).
Russell et al., "Rational modification of enzyme catalysis by engineering surface charge" Nature 328:496-500 (1987).
Siezen et al., "Homology Modelling and Protein Engineering Strategy of Subtilases, the Family of Subtilisn-Like Serine Proteinases" Protein Engineering 4(7):719-737 (1991).
Siezen et al., "Homology Modelling of the Catalytic Domain of Human Furin, a Model for the Eukaryotic Subtilisin-Like Proprotein Convertases" EJB pp. 255-266 (1993).
Stauffer et al., "The Effect on Subtilisin Activity of Oxidizing a Methionine Residue" The Journal of Biological Chemistry 244(19):5333-5338 (1969).
Svendsen, I., "Chemical Modifications of The Subtilisins With Specific Reference to the Binding of Large Substrates. A Review. " Carlsberg Rs. Commun. 41(5):237-291 (1976).
Wells et al., "Cloning, sequencing, and secretion of Bacillus amyloliquefaciens subtilisin in Bacillus subtilis" Nucleic Acids Research 11(22):7911-7929 (1983).
Wells et al., "Designing substrate specificity by protein engineering of electrostatic interactions" Proc. Natl. Acad. Sci USA 84:1219-1223 (1987).
Wise et al., "Expression of a human proprotein processing enzyme: correct cleavage of the von Willebrand factor precursor at a paired basic amino acid site" Proc. Natl. Acad. Sci. USA 87:9378-9382 (1990).
Wright et al., "Structure of Subtilisin BPN' at 2-5 A Resolution" Nature 221:235-242, 1969.
Bode et al., "Refined 1.2 A crystal structure of the complex formed between subtilisin Carlsberg and the inhibitor eglin c. Molecular structure of eglin and its detailed interaction with subtilisin" EMBO Journal 5(4):813-818 (1986).
Brenner et al., "Structural and enzymatic characterization of a puried prohormone-processing enzyme: Secreted, soluble Kex2 protease" Proc. Natl. Acad. Sci. USA 89:922-926 (1992).
Drenth et al., "Subtilisin Novo; The Three-Dimensional Structure and Its Comparison with Subtilisin BPN'" Eurpoean Journal of Biochemistry 26:177-181 (1972).
Hedstrom et al., "Converting Trypsin to Chymotrypsin: The Role of Surface Loops" Science, 255(5049):1249-1253 (1992).
Rheinnecker et al., "Variants of Subtilisin BPN' with Altered Specificity Profiles" Biochemistry 33:221-225 (1994).
Smeekens, Steven P., "Processing of Protein Precursors by a Novel Family of Substilisin-Related Mammalian Endoproteases" Bio/Technology 11:182-186 (1993).
Steiner et al., "The New Enzymology of Precursor Processing Endoproteases" Journal of Biological Chemistry 267(33):23435-23438 (1992).
Stennicke et al., "Effects of introduced aspartic and glutamic acid residues on the P'1 substrate specificity, pH dependence and stability of carboxypeptidase Y" Protein Engineering 7(7):911-916 (1994).
Ballinger et al., "Designing Subtilisin BPN' to Cleave Substrates Containing Dibasic Residues" J. Biochem. 34:13312-13319 (1995).
Estell et al., "Probing Steric and Hydrophobic Effects on Enzyme-Substrate Interactions by Protein Engineering" Science 233:659-663 (1986).
Graycar et al., "Altering the Proteolytic Activity of Subtilisin through Protein Engineering" Annals of the New York Academy of Sciences 672:71-79 (1992).
Nakayama et al., "Consensus Sequence for Precursor Processing at Mono-arginyl Sites" Journal of Biological Chemistry 267:16335-16340 (1992).
Wells et al., "Recruitment of Substrate-specificity Properties from One Enzyme Into a Related One by Protein Engineering" Proc. Natl. Acad. Sci. USA 84:5167-5171 (1987).
Ballinger Marcus D.
Wells James A.
Genentech Inc.
Grimes Eric
Kubinec Jeffrey S.
Moore William W.
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