Stable hybrid

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

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C536S022100, C536S023100, C536S024300

Reexamination Certificate

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07964344

ABSTRACT:
A hybrid formed of a probe nucleic acid immobilized onto a substrate and a sample nucleic acid, in which the target strand of the sample nucleic acid is longer than the probe nucleic acid, so that at least a 5′ end portion of the target strand extends upstream the target sequence; a 3′ end of the target strand is the same as a 3′ end of the target sequence or extends downstream the target sequence by at least one base from the 3′ end of the target sequence; and provided that when the number of bases of the extending 5′ portion is designated as L1, and the number of bases of the extending 3′ portion of the target strand is designated as L2, a value of L1/L2 falls within the range of 0 to 1.5 both inclusive. This hybrid is very stable so that useful for detecting a small amount of nucleic acid specifically with high sensitivity.

REFERENCES:
patent: 4775619 (1988-10-01), Urdea
patent: 5532128 (1996-07-01), Eggers et al.
patent: 5753439 (1998-05-01), Smith et al.
patent: 6387626 (2002-05-01), Shi et al.
patent: 6410229 (2002-06-01), Lockhart et al.
patent: 6468476 (2002-10-01), Friend et al.
patent: 6537759 (2003-03-01), Stanton, Jr.
patent: 6569671 (2003-05-01), Okamoto et al.
patent: 6593091 (2003-07-01), Keys et al.
patent: 6664051 (2003-12-01), Shinoki et al.
patent: 6686151 (2004-02-01), Lazar et al.
patent: 6686439 (2004-02-01), Kenmoku et al.
patent: 6737238 (2004-05-01), Suzuki et al.
patent: 2001/0010910 (2001-08-01), Hyldig-Nielsen et al.
patent: 2001/0055114 (2001-12-01), Suzuki et al.
patent: 2002/0045169 (2002-04-01), Shoemaker et al.
patent: 2002/0068282 (2002-06-01), Okamoto et al.
patent: 2002/0115072 (2002-08-01), Okamoto et al.
patent: 2002/0197630 (2002-12-01), Knapp et al.
patent: 2003/0059907 (2003-03-01), Suzuki et al.
patent: 2003/0087259 (2003-05-01), Clancy et al.
patent: 2004/0241643 (2004-12-01), Yamamoto et al.
patent: 2008/0176757 (2008-07-01), Hassibi et al.
patent: 11-508122 (1999-07-01), None
patent: 2001-128683 (2001-05-01), None
patent: 2006-507792 (2006-03-01), None
patent: WO 95/11995 (1995-05-01), None
patent: 96/29431 (1996-09-01), None
patent: WO 02/27026 (2002-04-01), None
patent: WO 02/38729 (2002-05-01), None
patent: 03/038042 (2003-05-01), None
patent: 2004/031406 (2004-04-01), None
Shumaker et al. Mutation detection by solid phase primer extension. Human Mutation 7:346-354 (1996).
The Stratagene Catalog, p. 39 (1988).
Pastinen et al., A system for specific, high-throughput genotyping by allele-specific primer extension. Genome Research 10 : 1031-1042 (2000).
Burland et al., Long PCR facilitates concise cloning and sequencing with a minimal tiling set of templates. Biotechniques 23(6) : 1070-1075 (1997).
Stimpson et al., Real-time detection of DNA hybridization and melting on oligonucleotide arrays by using optical wave guides. PNAS 92:6379-6383 (Jul. 1995).
Pease et al. , Light-generated oligonucleotide arrays for rapid DNA sequence analysis. PNAS 91 : 5022-5026 (May 1994).
Guo et al., Direct flurescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucleic Acids Research 22(24) :5456-5465(1994).
Culha et al., Application of a miniture biochip using the molecular beacon probe in breast cancer gene BRACA1 detection. Biosensors & Bioelectronics 19 : 1007-1012 (Apr. 15, 2004).
Beaucage, Strategies in the preparation of DNA oligonucleotide Arrays for diagnostic applications. Current Medicinal Chemistry 8 : 1213-1244 (2001).
Weiler et al., Hybridization based DNA screening on peptide nucleic acid (PNA) oligomer arrays. Nucleic Acids Research 25(14) : 2792-2799 (1997).
Lai et al., Quantification of Substance P mRNA in human immune cells by real-time reverse transcriptase PCR assay. Clinical and Diagnostic Laboratory Immunology 9(1) : 138-143 (Jan. 2002).
Tyagi et al., Molecular Beacons : Probes that fluoresce upon hybridization. Nature Biotechnology 14 : 303-308 (1996).
Tsourkas et al., Hybridization of 2′-O-methyl and 2′-deoxy molecul;ar beacons to RNA and DNA targets. Nucleic Acids Research 30(23) :5168-5174 (2002).
Barlic-Maganja et al., Highly sensitive one-tube RT-PCR and microplate hybridization assay for the detection and for the discrimination of classical swine fever virus from other pestiviruses. J. of Virological Methods 95 : 101-110 (2001).
Wang et al. Label-free hybridization detection of a single nucleotide mismatch by immobilization of molecular beacons on an agarose film. Nucleic Acids Research 30(12) e61 : 1-9 (2002).
Belanger et al., Rapid detection of Shiga Toxin-producing bacteria in feces by multiplex PCR with molecular beacons on the smart cycler. Journal of Clinical Microbiology 40(4) : 1436-1440 (Apr. 2002).
He et al., Detection and quantification of mitochondrial DNA deletions in individual cells by real-time PCR. Nucleic Acids Research 30(12) e61 : 1-9 (2002).
Perlette et al. Real-time monitoring of intracellular mRNA hybridization inside single living cells. Analytical Chemistry 73 : 5544-5550 (2001).
Tamiya et al., Two types of defective human T-lymphotopic virus type I provirus in adult T-cell leukemia. Blood 88 (8) : 3065-3073 (Oct. 1996).
Cheng et al., Characterization of large CTG repeat expansions in myotonic dystrophy alleles using PCR. Human Mutation 7 : 304-310 (1996).
Saiki et al.Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes PNAS 86(16) : 6230-6234 (1989).
Lawn et al. The nucleotide sequence of the Human β-globin gene Cell 21 : 647-651 (1980).
M. Lopez, et al., “Fingerprinting of prokaryotic 16S rRNA genes using oligodeoxyribonucleotide microarrays and virtual hybridization,” Nucleic Acids Research, vol. 31, No. 2, 2003, pp. 779-789.
A. Femino, et al., “Visualization of Single RNA Transcripts in Situ,” Science, vol. 280, Apr. 24, 1998, pp. 585-590.
Ray, et al., “Peptide nucleic acid (PNA): its medical and biotechnical applications and promise for the future”, The FASEB Journal, vol. 14, Jun. 2000, pp. 1041-1060.

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