Solid phase oligonucleotide synthesis using phospholane intermed

Organic compounds -- part of the class 532-570 series – Organic compounds – Carbohydrates or derivatives

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536 2671, 536 2680, 536 2690, C07H 2102, C07H 2104

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055126685

ABSTRACT:
Methods and compounds are provided for solid phase synthesis of oligonucleotides and related polymers by condensing protected monomer-O- 1,3,2-dichalcogen-substituted-phospholane! synthons in the presence of a catalytic base. Compounds of the invention include 2-N-substituted-1,3,2-dichalcogen-substituted-phospholane precursors of the above synthons, the protected monomer-O- 1,3,2-dichalcogen-substituted-phospholane! synthons, and P-chiral oligonucleotides and related P-chiral polymers.

REFERENCES:
patent: 4816571 (1987-01-01), Andrus et al.
patent: 5169842 (1991-05-01), Lobberding et al.
Bayever et al., "Guest Editorial: Systemic Human Antisense Therapy Begins", Antisense Res. Development, 2, 109-110 (1992).
Ratajczak et al., "In vivo Treatment of Human Leukemia in a scid Mouse Model with C-myb Antisense Oligodeoxynucleotides, " Proc. Nat. Acad. Sci. USA, 89, 11823-11827 (1992).
Simons et al., "Antisense c-myb Oligonucleotides Inhibit Intimal Arterial Smooth Muscle Cell Accumulation in vivo," Nature, 359, 67-70 (1992).
Biro et al., "Inhibitory Effects of Antisense Oligodeoxynucleotides Targeting c-Myc mRNA on Smooth Muscle Cell Proliferation and Migration," Proc. Nat. Acad. Sci. USA, 90, 654-658 (1993).
Whitesell et al, Stability, clearance, and disposition of intraventricularly administered oligodeoxynucleotides: Implications for therapeutic application within the central nervous system, Proc. Natl. Acad. Sci., 90: 4665-4669 (1993).
Agrawal et al, Pharmacokinetics, biodistribution, and stability of oligodeoxynucleotide phosphorothioates in mice, Proc. Natl. Acad. Sci., 88: 7595-7599 (1991).
Iverson, In vivo studies with phosphorothioate oligonucleotides: pharmacokinetics prologue, Anti-Cancer Drug Design, 6:531-538 (1991).
Skorski et al, Suppression of Philadelphia leukemia cell growth in mice by CR-A antisense oligonucleotide, Proc. Natl. Acad. Sci., 91:4504-4508 (1994).
Heron American Biotechnology Laboratory (Sep. 1984) System for DNA synthesis.
Matteucci and Caruthers J. Am. Chem. Soc. 103:3185-3191 (1981) Synthesis of deoxyoligonucleotides on a polymer support.
Hurst An Introduction to the Chemistry and Biochemistry of Pyrimidines, Purines and Pteridines (John Wiley, New York 1980) Chapter 2: The Chemistry of Pyrimidines Chapter 3: The Chemistry of Purines and Pteridines.
Atkinson et al pp. 50-51 in Gait, editor Oligonucleotide synthesis: A practical approach (IRL Press, Washington, D.C., 1984) Solid-phase synthesis of oligodeoxyribonucleotides by the phosphitetriester method.
Bloch Ann. New York Acad, Sci., vol. 255 (1975) Chemistry, biology, and clinical uses of nucleoside analogs.
Jencks pp. 168-169 in Catalysis in Chemistry and Enzymology (McGraw-Hill, New York, 1969) Excerpt from Chapter 2 entitled "General Acid-Base Catalysis".
Morrison and Boyd pp. 456-457 in Organic Chemistry, Third Edition (Allyn and Bacon, Boston, 1975) Excerpt from Chapter 14 entitled "Acyl Halides".
Scheit pp. 1-61 in Nucleotide Analogs (Wiley-Interscience, New York, 1983) Chapter 1 entitled "Chemical Structure of Nucleotides" and excerpt from chapter 2 entitled Nucleotides with modified heterocyclic substituents.
Kornberg and Baker DNA Replication, Second Edition (Freeman, New York, 1992) Section 14-3 entitled "Nucleotide analogs incorporated into DNA or RNA".
Kudelska et al., "Reaction of Sugar Epoxides with Phosphorothioic Acids, Evidence of the Pentacoordinate Phosphorus Intermediate in the Reaction of 5,6-anhydro-1,2-O-isopropylidene-.alpha.-D-glucofuranose with Phosphorothioic Acid," Tetrahedron, 42(2), 629-636 (1986).
Michalska et al., "Mechanistic and Synthetic Aspects of Intramolecular Base-Catalyzed Migration of the Thiophosphoryl Group from Sulfur to Oxygen in Sugar .beta.-Hydroxyphosphorodithioate Systems," J. Am. Chem. Soc., 113, 7945-7951 (1991).
Stec et al., "Novel Route to Oligo(Deoxyribonucleoside Phosphorothioates). Stereocontrolled Synthesis of P-Chiral Oligo(Deoxyribonucleoside Phosphorothioates)," Nucl. Acids Res., 19(21), 5883-5888 (1991).
Cosstick et al., "An Approach to the Stereoselective Synthesis of S.sub.p -dinucleoside Phosphorothioates Using Phosphodiester Chemistry," Nucl. Acids Res., 15 (23), 9921-9932 (1987).
Stec et al., "Reserve-Phase High-Performance Liquid Chromatographic Separation of Diasteromeric Phosphorothioate Analogues of Oligodeoxyribonucleotides and Other Backbone-Modified Congeners of DNA," J. Chromatography, 326, 263-280 (1985).
Lesnikowski et al., "Steroselective Synthesis of P-homochiral Oligo(thymidine Methanephosphonates," Nucl. Acids Res., 16(14), 11675-11689 (1988).
Slim et al., "Conformationally Defined Phosphorothioate-containing Oligoribonucleotides in the Study of the Mechanism of Cleavage of Hammerhead Ribozymes," Nucl. Acids Res., 19(6), 1183-1188 (1991).
Lesnikowsku et al., "Octa(thymidine methanephosphonates) of Partially Defined Stereochemistry: Synthesis and Effect of Chirality at Phosphorus on Binding to Pentadecadeoxyriboadenylic Acid," Nucl. Acids Res., 18(8), 2109-2115 (1990).
Fujii et al., "Acylphosphonates. 7. A New Method for Stereospecific and Stereoselective Generation of Dideoxyribofuranoside Phosphorothioates Via the Acylphosphonate Intermediates," Tetrahedron. 43(15). 3395-3407 (1987).
Willson et al., "Etude du Mecanisme des Reactions D'acidolyse D'alcoolyse et D'aminolyse des Oxathiaphospholanes-1,3,2," Bull. Soc. Chim. Fr., 5.sup.e Serie, 1975, 615-620.
Thuong et al., "Nouvelle Methode des Preparation D'esters Phosphorique, Renformant un Groupe .beta.-mercapoethyle, Utilinables en Synthese Nucleotidique," Bull. Soc. Chim Fr., Part II, 1981 (Jan-Feb), 52-56.
Dahl et al., "Mechanistic Studies on the Phosphoramidite Coupling Reaction in Oligonucleotide Synthesis. I. Evidence for Nucleophilic Catalysis by Tetrazole and Rate Variations with Phosphorus Substituents," Nucl. Acids Res., 15(4), 1729-1743 (1987).
Richter et al., "A Programmed Five-membered Cyclic Phosphorylating Reagent for the Synthesis of Oligonucleotides and Its Use," Tetrahedron, 46(9), 3617-3172 (1990).

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