Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or...
Reexamination Certificate
2006-04-13
2009-08-11
Navarro, Mark (Department: 1645)
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
C435S007100, C435S007200, C435S007210
Reexamination Certificate
active
07572575
ABSTRACT:
This invention relates to methods of screening compounds that modulate cellular and organismal processes by modification of the activity of SIR2 and/or transcription factors, e.g., p53, particularly methods of screening for compounds that modify lifespan and/or metabolism of a cell or an organism by modulation of the activity of SIR2 and/or transcription factors, e.g., p53, and more particularly to methods of screening for compounds that modulate the activity of Sir2 and/or transcription factors, e.g., p53. In particular, the present invention relates to a method for screening a compound, by providing a test mixture comprising a transcription factor, Sir2, and a Sir2 cofactor with the compound, and evaluating an activity of a component of the test mixture in the presence of the compound. The invention further relates to therapeutic uses of said compounds. The invention further relates to a method of modifying the acetylation status of a transcription factor binding site on histone or DNA by raising local concentrations of Sir2.
REFERENCES:
patent: 4873191 (1989-10-01), Wagner et al.
patent: 5010175 (1991-04-01), Rutter et al.
patent: 5093246 (1992-03-01), Chech et al.
patent: 5223409 (1993-06-01), Ladner et al.
patent: 5270163 (1993-12-01), Gold et al.
patent: 5270170 (1993-12-01), Schatz et al.
patent: 5283173 (1994-02-01), Fields et al.
patent: 5288514 (1994-02-01), Ellman
patent: 5506337 (1996-04-01), Summerton et al.
patent: 5519134 (1996-05-01), Acevedo et al.
patent: 5525735 (1996-06-01), Gallop et al.
patent: 5539083 (1996-07-01), Cook et al.
patent: 5549974 (1996-08-01), Holmes
patent: 5569588 (1996-10-01), Ashby et al.
patent: 5593853 (1997-01-01), Chen et al.
patent: 6884597 (2005-04-01), Taya et al.
patent: 2003/0082668 (2003-05-01), Tamai et al.
patent: 2003/0124101 (2003-07-01), Gu et al.
patent: 2003/0207325 (2003-11-01), Guarente et al.
patent: WO 91/19735 (1991-12-01), None
patent: WO 92/00091 (1992-01-01), None
patent: WO 93/20242 (1993-10-01), None
patent: WO 98/17823 (1998-04-01), None
patent: WO 99/10482 (1999-03-01), None
patent: WO 01/12851 (2001-02-01), None
patent: WO 01/79842 (2001-10-01), None
patent: WO 02/102981 (2002-12-01), None
Abraham et al., “Posttranslational modification of p53 protein in response to ionizing radiation analyzed y mass spectrometry”, J. Mol. Biol., 2000, vol. 295, pp. 853-864.
Alfred, “Counting the calories to immortality”, Nat. Rev. Genet., 2000, vol. 1(2), p. 88.
Appella et al., “Signaling to p53: breaking the posttranslational modification code”, Pathol. Biol,, 2000, vol. 48, pp. 227-245.
Ashcroft, “Stress signals utilize multiple pathways to stabilize p53”, Mol. Cell Biol., 2000, vol. 20(9), pp. 3224-3233.
Avalos, Jose L., et al., “Structure of a Sir2 Enzyme Bound to an Acetylated p53 Peptide”, Molecular Cell, 2002, vol. 20, No. 3, pp. 523-535.
Avantaggiati et al., “Recruitment of p300/CB0 in p53-dependent signal pathways”, Cell, 1997, vol. 89, pp. 1175-1184.
Barak et al., “mdm2 expression is induced by6 wild type p53 activity”, EMBO J., 1993, vol. 12, pp. 461-468.
Bedalov et al., “Identification of a small molecule inhibitor of Sir2p”, Proc. Natl. Acad. Sci., Dec. 2001, vol. 98, pp. 15113-15118.
Bernstein et al., “Genomewide studies of histone deacetylase function in yeast”, Proc. Natl. Acad. Sci. USA, 2000. vol. 97, pp. 13708-13713.
Brachmann et al., “The SIR2 gene family, conserved from bacteria to humans, functions in silencing, cell cycle progression, and chromosome stability”, Genes Dev., 1995, vol. 9, pp. 2888-2902.
Brower et al., “Growth of cell lines and clinical specimens of human non-small cell lung cancer in a serum-free defined medium”, Cancer Research, 1986, vol. 46(2), pp. 798-806.
Buckley et al., “Alteration in pim-1 and c-myc expression associated with sodium butyrate-induced growth factor dependency in autonomous rat Nb2 lymphoma cells”, Cell Growth Differ., 1996, vol. 7, pp. 1713-1721.
Butler et al., “Suberoylanilide hydroxamic acid, an inhibitor of histone deacetylase suppresses the growth of prostate cancer cells in vitro and in vivo”, Cancer Res., 2000, vol. 60, pp. 5165-5170.
Campbell et al., j. Org. Chem., 1994, vol. 59, p. 658.
Campisi, j., “Aging, chromatin, and food restriction-connecting the dots”, Science, 2000, vol. 289, pp. 2062-2063.
Canman et al., “Activation of the ATM kinase by ionizing radiation and phosphorylation of p53”, Science, 1998, vol. 281, pp. 1677-1679.
Carroll et al., “Photoaffinity labeling of active site residues in ADP-ribosylating toxins”, Methods Enzymo9l., 1994, vol. 235, pp. 631-639.
Chao et al., “p53 transcriptional activity is essential for p53-dependent apoptosis following DNA damage”, EMBO J., 2000, vol. 19, pp. 4967-4975.
Chehab et al., “Phosphorylation of Ser-20 mediates stabilization of human p53 in response to DNA damage”, Proc. Natl. Acad. Sci. USA, 1999, vol. 96, pp. 13777-13782.
Chen et al., “sir2 mutants ofKluyveromyces lactisare hypersensitive to KNA-targeting drugs”, Mol. Cell. Biol., 1994, vol. 14, 4501-4508.
Chen et al., “Apoptosis or senescence-like growth arrest: influence of cell-cycle position, p53, p21 and bax in H202 response of normal human fibroblasts”, Biochem. J., 2000, vol. 347, pp. 543-551.
Cheung et al., “Signaling to chromatin through histone modifications”, Cell, 2000, vol. 103, pp. 263-271.
Chien et al., “The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest”, Proc. Natl. Acad. Sci. USA, 1991, vol. 88, pp. 9578-9582.
Cho et al., “An unnatural biopolymer”, Science, 1993, vol. 261, p. 1303.
Chresta et al., “Oddball p53 in testicular tumors”, Nat. Med., 1996, vol. 2, pp. 745-746.
Cull et al., “Screening for receptor ligands using large libraries of peptides linked to the C terminus of the lac repressor”, Proc. Natl. Acad. Sci. USA, 1992, vol. 89, pp. 1865-1869.
Cwirla et al., “Peptides on phage: a vast library of peptides for identifying ligands”, Proc. Natl. Acad. Sci. USA, 1990, vol. 87, pp. 6378-6382.
Devlin et al., “Random peptide libraries: a source of specific protein binding molecules”, Science, 1990, vol. 249, pp. 404-406.
De Witt et al., “Diversomes': An approach to nonpeptide, nonoligomeric chemical diversity”, Proc. Natl. Acad. Sci. USA, 1993, vol. 90, p. 6909.
Di Cristofano et al., “Impaired Fas response and autoimmunity in Pten+/− mice”, Science, 1999, vol. 285, pp. 2122-2125.
Dhar et al., “Inactivation of 14-3-3sigma influences telomere behavior and ionizing radiation-induced chromosomal instability”, Mol. Cell. Biol., 2000, vol. 20, pp. 7764-7772.
Dumaz and Meek, “Serine 15 phosphorylation stimulates p53 transactivation but does not directly influence interaction with HDM2”, EMBO J., 1999, vol. 18(24), pp. 7002-7010.
Edington, Bio/Technology, 1993, vol. 11, p. 285.
El-Deriry et al., “WAF1, a potential mediator of p53 tumor suppression”, Cell, 1993, vol. 75, pp. 817-825.
Erb et al., “Recursive deconvolution of combinatorial chemical libraries”, Proc. Natl. Acad. Sci. USA, 1994, vol. 91, p. 11422.
Felici, “Selection of antibody ligands from a large library of oligopeptides expressed on a multivalent exposition vector”, J. Mol. Biol., 1991, vol. 222, pp. 301-310.
Ferbeyre et al., “MIL is induced by oncogenic ras and promotes premature senescence”, Genes Dev., 2000, vol. 14, pp. 2015-2027.
Finkel and Holbrook, “Oxidants, oxidative stress and the biology of ageing”, Nature, 2000, vol. 408, pp. 239-247.
Finnin et al., “Structures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors”, Nature (London), 1999, vol. 401, pp. 188-193.
Finnin et
Guarente Leonard
Imai Shin-ichiro
Vaziri Homayoun
Auer Henry E.
Massachusetts Institute of Technology
Navarro Mark
Proteus Patent Practice LLC
Whitehead Institute for Biomedical Research
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