Silyl phosphorylating reagents and methods of using them

Organic compounds -- part of the class 532-570 series – Organic compounds – Carbohydrates or derivatives

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536 253, 536 265, 558199, C07H 102, C07H 2104, C01B 3300

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active

053808355

ABSTRACT:
Oligonucleotide phosphorylating reagents wherein the silyl moiety has three bulky substituents, such as phenyl or t-butyl, and the silyl moiety is attached to the carbon of an ethanol group whose hydroxyl is an activated phosphate group. The preferred compound is 2-triphenylsilylethyl-2-cyanoethyl-N,N diisopropylaminophosphoramidite. The method of using this reagent to phosphorylate the 5'-OH of nucleosides and oligonucleotides is also disclosed. Nucleosides and nucleotides whose 5'-OH has been phosphorylated by the above reagent are also disclosed. The phosphorylated intermediate bearing the silyl group may be separated from failure product on the basis of bulky substituents on the silyl protecting group, which can be later removed by fluoride ion.

REFERENCES:
patent: 5039706 (1991-08-01), Engels et al.
patent: 5071974 (1991-12-01), Groody
Horn et al. Tetrahedron Letters 27:4705-4708, 1986.
Uhlmann et al. Tetrahedron Letters 27:1023-1026, 1986.
Honda et al. Tetrahedron Letters 22:2093-2096, 1981.

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