Selective genome amplification

Chemistry: molecular biology and microbiology – Micro-organism – tissue cell culture or enzyme using process... – Preparing compound containing saccharide radical

Reexamination Certificate

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Reexamination Certificate

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07368265

ABSTRACT:
The invention provides methods and compositions for amplifying selected polynucleotides, especially selected subsets of restriction fragments. Generally, methods of the invention are implemented by ligating adaptors containing at least one promoter sequence to such fragments under conditions that promote the formation of closed single stranded or double stranded structures, which are capable of serving as cyclical templates for transcription.

REFERENCES:
patent: 5130238 (1992-07-01), Malek
patent: 5169766 (1992-12-01), Schuster
patent: 5194370 (1993-03-01), Berninger
patent: 5215899 (1993-06-01), Dattagupta
patent: 5399491 (1995-03-01), Kacian
patent: 5409818 (1995-04-01), Davey
patent: 5437990 (1995-08-01), Burg
patent: 5474916 (1995-12-01), Reischi
patent: 5545522 (1996-08-01), Van Gerlder
patent: 5616478 (1997-04-01), Chetverin
patent: 5766849 (1998-06-01), McDonough
patent: 5891636 (1999-04-01), Van Gelder
patent: 5914229 (1999-06-01), Loewy
patent: 5932451 (1999-08-01), Wang
patent: 6025133 (2000-02-01), Stull
patent: 6132997 (2000-10-01), Shannon
patent: 6379899 (2002-04-01), Ullman
patent: 6403319 (2002-06-01), Lizardi
patent: 6511803 (2003-01-01), Church
patent: 6686156 (2004-02-01), Kurn
patent: 6787308 (2004-09-01), Balasubramanian
patent: 6794141 (2004-09-01), Erlander
patent: 2003/0165963 (2003-09-01), Liao
patent: 2003/0219792 (2003-11-01), Piepenburg
patent: 2004/0161792 (2004-08-01), Liao
patent: 2005/0112631 (2005-05-01), Piepenburg
patent: 2005/0142559 (2005-06-01), Makrgiorgos
patent: 2007/0031857 (2007-02-01), Makarov et al.
patent: WO 2004/027025 (2004-04-01), None
patent: WO 2004/076683 (2004-09-01), None
patent: WO 2006081222 (2006-08-01), None
Kim et al (Biochemical and Biophysical Research Communications, vol. 336, pp. 168-174, 2005.
Broude, N. Trends in Biotechnology, vol. 20, No. 6, pp. 249-256, 2002.
Allawi, H.T. & SantaLucia, J., Jr.,Thermodynamics and NMR of internal G.T mismatches in DNA. Biochemistry 36, 10581-94 (1997).
Becker-Andre et al,Absolute mRNA quantification using the polymerase chain reaction(PCR).A novel approach by a PCR aided transcript titration assay(PATTY).Nucleic Acids Research, 17: 9437-9447 (1989).
Bernard et al, Color multiplexing hybridization probes using the apolipoprotein E locus as a model system for genotyping. Anal. Biochem., 273: 221-228 (1999)(two-color real-time PCR).
Dean et al,Comprehensive human genome amplification using multiple displacement amplificationProc. Natl. Acad. Sci., 99: 5261-5266 (2002).
Diviacco et al.,A novel procedure for quantitative polymerase chain reaction by coamplification of competitive templates.Gene, 122: 313-320 (1992).
Guatelli et al. Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication. Proc. Natl. Acad. Sci., 87: 1874-1878 (1990).
Hawkins et al,Whole genome amplification—applications and advances.Current Opinion in Biotechnology, 13: 65-67 (2002).
Kim et al. DARFA: a novel technique for studying differential gene expression and bacterial comparative genomics. Biochemical and Biophysical Research Communications, 336: 168-174 (2005).
Kwoh. Transcription-based amplification system and detection of amplified human immunodeficiency virus 1 with a bead-based sandwich hybridization format. Proc. Natl. Acad. Sci. 86: 1173-1177 (1989).
Leone et al,Molecular beacon probes combined with amplification by NASBA enable homogeneous, real-time detection of RNANucleic Acids Research, 26: 2150-2155 (1998).
Mesmaeker et al,Backbone modifications in oligonucleotides and peptide nucleic acid systemsCurrent Opinion in Structural Biology, 5: 343-355 (1995).
M. Kanehisa Use of statistical criteria for screening potential homologies in nucleic acid sequences Nucleic Acids Res. 12:203 (1984).
Mackay et al, Real-time PCR in virology Nucleic Acids Research, 30: 1292-1305 (2002).
Margulies et al Genome sequencing in microfabricated high-density picolitre reactors (2005), Nature, 437: 376-380.
Shendure et al, Accurate multiplex polony sequencing of an evolved bacterial genome Science, 309: 1728-1732 (2005).
Xu and Kool, High sequence fidelity in a non-enzymatic DNA autoligation reaction Nucleic Acids Research, 27: 875-881 (1999).

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