Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Reexamination Certificate
2005-10-04
2005-10-04
Myers, Carla J. (Department: 1634)
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
C436S019000, C436S091000, C436S169000, C536S023100, C536S023200, C536S023700, C536S024320, C536S024330
Reexamination Certificate
active
06951718
ABSTRACT:
The present invention is related to rpoB gene fragments and method for the diagnosis and identification ofMycobacterium tuberculosisand non-lubercuolsis Mycobacterial strains using rpoB gene and it's fragments.
REFERENCES:
patent: 6242584 (2001-06-01), Kook et al.
patent: 2002/0187467 (2002-12-01), Gingeras et al.
Lee, H. et al. Species identification of mycobacteria by PCR-restriction fragment length polymorphism of the rpoB gene. Journal Clinical Microbiology 38(8):2966-2971 (Aug. 2000).
Talenti, A. et al. Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. Journal of Clinical Microbiology 31(2):175-178 (Feb. 1993).
Abed, Y., Bollet, and P. de Micco. 1995. Demonstration ofMycobacterium kansasiispecies heterogeneity by the amplification of the 16S-23S spacer region. J. Med Microbiol. 43:156-158.
Avaniss-Aghajani, E., K. Jones, A. Holtzman, T. Aronson, N. Glover, M. Bolan, S. Froman, and C. F. Brunk. 1996. Molecular technique for rapid identification of mycobacteria. J. Clin. Microbial. 34:98-102.
Boddinghaus, B., T. Flohr, H. Blocker, and E. C. Bottger. 1990. Detection and identification of mycobacteria by amplification of rRNA. J. Clin. Microbiol. 28:1751-1759.
Bosne, S., and V. Levy-Frebault. 1992. Micobactin analysis as an aid for the identification andMycobacterium fortuitumandMycobacterium chelonaesubspecies. J. Clin. Microbiol. 30:1225-1231.
Butler, W. R., K. C. Jost, Jr., and J. O. Kilburn 1991. Identification of mycobacteria by high-performance liquid chromatography. J. Clin. Microbiol. 29:2468-2472.
Corpet. F. 1988. Multiple sequence alignment with hierachical clustering Nucl. Acids. Res. 16:10881-10890.
Devallois A., K. S. Goh, and N. Rastogi. 1997. Rapid identification of mycobacteria species and proposition of an algorithm to differentiate 34 mybobacterial species to species level by PCR-RFLP analysis of the hsp65 gene. J. Clin. Microbiol. 35:2969-2973.
Fiss, E., F. Chehab, and G. Brooks. 1992. DNA amplification and reverse dot blot hybridization for detection and identification of mycobacteria to the species level in the clinical laboratory. J. Clin. Microbiol. 30:1220-1224.
Fries, J., R. Patel, W. Piessen, and D. Wirth. 1990. Genus and species-specific DNA probes to identify mycobacteria using the polymerase chain reaction. Mol. Cell. Probes. 4:87-105.
Gingeras, T. R., G. Ghandour, E. Wang, A. Berno, P. M. Small, Drobniewski, D. Alland, E. Desmond, M. Holoknly, and J. Drenkow, 1998. Simultaneous genotyping and species identification using hybridization patter recognition analysisi of generic Mycombacterium DNA arrays. Genome Res. 8:435-448.
Hance, A. J., B. Grandchamp, V. Levy-Frebault, D. Lecossier, J. Rauzier, D. Bocart, and B. Gicquel. 1989. Detection and identification of mycobacteria by amplification of mycobacterial DNA. Mol. Microbiol. 3:843-849.
Hetherington, S. V., A. S. Watson, and C. C. Patrick. 1995. Sequence and analysis of the rpoB gene ofMycobacterium smegmatis. Antimicrob. Agents Chemother. 39:2164-2166.
Honore, N. T., S. Bergh, S. Chanteau, F. Doucet-Populaire, K. Eiglmeier, T. Garnier, C. Georges, P. Launois, T. Limpaiboon, S. Newton, K. Niang, P. Del Portillo, G. R. Ramesh, P. Reddi, P. R. Ridel, N. Sittisombut, S. Wu-Hunter, and S. T. Cole. 1993. Nucleotide sequence of the first cosmid from theMycobacterium lepraegenome project: structure and function of the Rif-Str regions. Mol. Microbiol. 7:207-214.
Hughes, M. S., R. A. Skuce, L.-A. Beck, and S. D. Neill. 1993. Identification of mycobacteria from animals by restriction enzyme analysis and direct DNA cycle sequencing of polymerase chain reaction-amplified 16S rRNA gene sequences. J. Clin. Microbiol. 31:3216-3222.
Kapur, V., L-L. Li, M. R. Hamrick, B. B. Plikaytis, T. M. Shinnick, A. Telenti, W. R. Jacobs, A. Banerjee, S. Cole, K. Y. Yuen, J. E. Clarridge, B. N. Kreswirth, and J. M. Musser. 1995. Rapid Mycobacterium species assignment and unambiguous identification of mutations associated with antimicrobial resistance inMycobacterium tuberculosisby automated DNA sequencing. Arch. Pathol. Lab. Med. 119:131-138.
Kim, B.-J., S.-H. Lee, M.-A. Lyu, S.-J. Kim, G.-H. Bai, S.-J. Kim, G.-T. Chae, E.-C. Kim, C.-Y. Cha, and Y.-H. Kook. 1999. Identification of Mycobacterial species by comparative sequence analysis of the RNA polymerase gene (rpoB). J. Clin. Micro. 37:1714-1720.
Kirschner, P., B. Springer, U. Vogel, A. Meier, A. Wrede, M. Kiekenbeck, F.-C. Bange, and E. C. Bottger. 1993. Genotypic identification of Mycobacteria by nucleic acid sequence determination: report of 2-year experience in a clinical laboratory. J. Clin. Micorbiol. 31:2882-2889.
Kusunoki, S., T. Ezaki, M. Tamesada, Y. Hatanka, K. Asano, Y. Hashimoto, and E. Yabuuchi, 1991. Application of colorimetric microdilution plate hybridization for rapid genetic identification of 22 mycobacterium species. 29:1596-1603.
Levey-Frebault V., M. Daffe, K. S. Goh, M.-A. Laneelle, C. Asselineau and H. L. David. 1983. Identification of Mycobacterium species. J. Clin. Microbiol. 29:1596-1603.
Mabilat, C., S. Desvarenne, G. Panteix, N. Machabert, M.-H. Bernillon, G. Guardiola, and P. Cros. 1994. Routine identification ofMycobacterium fortuitumandMycobacterium chelonei. J. Clin. Microbiol. 32:2702-2705.
Marks, J., and T. Szulga. 1965. Thin-layer chromatography of mycobacterial lipids as an aid to classification; technical procedures;Mycobacterium fortuitum. Tubercle 46:400-411.
Miller, L. P., J. T. Crawford, and T. M. Shinnick. 1994. The rpoB gene ofMycobacterium tuberculosis. Antimicrob. Agents Chemother. 38:805-811.
Musial, C., L. Tice, L. Stockman, and G. Roberts. 1988. Identification of mycobacteria from culture by using the Gen-probe rapid diagnostic system forMycobacterium aviumcomplex andMycobacterium tuberculosiscomplex. J. Clin. Microbiol. 26:2120-2123.
Picardeau, M., G. Prod'hom, L. Raskine, M. P. LePennec, and V. Vincent, 1997. Genotypic characterization of five subspecies ofMycobacterium kansasii. J. Clin. Microbiol. 35:25-32.
B. D. Plikaytis, M. A. Yakrus, W. R. Butler C. L. Woodley, V. A. Silcox, and T. M. Shinnick, 1992. Differentiation of slowly growing Mycobacterium species, includingMycobacterium tuberculosis, by gene amplification and restriction fragment length polymorphism analysis. J. Clin. Microbiol. 30:1815-1822.
Rogall, T., T. Flohr, and E. Bottger. 1990 Differentiation of Mycobacterium species by direct sequencing of amplified DNA. J. Gen Microbiol. 136:1915-1920.
Ross, B. C., K. Jackson, M. Yang, A. Sievers, and B. Dwyer. 1992. Identification of genetically distinct subspecies ofMycobacterium kansasii. J. Clin. Microbiol. 30:2930-2933.
Shinners, D. and H. Yeager, Jr. 1999. Nontuberculous Mycobacterial infection. Clinical syndromes and diagnosis: overview p341-350. In D. Schlossberg (ed.), Tuberculosis and nontuberculous mycobacterial infection 4thed. W. B. Sunders Co., Philadelphis. PA.
Shinnick. 1987, The 65-Kilodalton Antigen ofMycobacterium tuberculosis. J. Bacteriol. 169:1080-1088.
Shinnick, T. M., M. H . Vodkin, and J. C. Williams. 1988 TheMycobacterium tuberculosis65-Kilodlton antigen is a heat shock protein which corresponds to common antigen and to theEscherichia coliGroEL protein. Infect Immun. 56:446-451.
Soini, H., E. C. Bottger, and M. K. Viljanen 1994 Identification of Mycobacteria by PCR-Based sequence determination of the 32-Kilodalton protein gene. J. Clin. Microbiol. 32:2944-2947.
Springer, B., L. Stockman, K. Teschner, G. D. Roberts, and E. C. Bottger. 1996. Two-laboratory collaborative study on identification of Mycobacteria: molecular versus phenotypic methods. J. Clin. Microbiol. 34:296-303.
Takewaki, S.-I., K. Okuzumi, I. Manabe, M. Tanimura, K. Miyamura, K.-I. Nakahara, Y. Yazaki, A. Ohkubo, and R. Nagai. 1994. Nucleotide sequence comparison of the Mycobacterial dnaJ gene and PCR-restriction fragment length polymorphisim analysis for identification of Mycobacterial species. Int. J. Syst. Bacteriol44:159-166.
Taylor, T. B., C. Patterson, Y. Hale and W. W. Safranek. 1997. Routine use of PCR-restriction fragment length polymorphism analys
Bai Gill-Han
Cho Sang-Nae
Kim Sang-Jae
Kim Yeun
Lee Hyeyoung
Cho Sang-Nae
Johannsen Diana
Lee Hyeyoung
Myers Carla J.
Nixon & Vanderhye P.C.
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