Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Reexamination Certificate
2000-10-10
2004-02-24
Brusca, John S. (Department: 1631)
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
C435S091310, C536S023200
Reexamination Certificate
active
06696250
ABSTRACT:
This invention concerns compositions of RNA functioning as an RNA enzyme, i.e. a ribozyme in several capacities: dephosphorylase (acid phosphatase and transphosphorylase), ribonucleotidyl transferase (polymnerase activity) and sequence-specific endoribonuclease activities.
SUMMARY
It is found that purified ribonucleic acid (RNA) can serve as an enzyme acting on other RNA molecules in vitro (ribozyme) as a: 1) dephosphorylating enzyme catalyzing the removal of 3′ terminal phosphate of RNA in a sequence-specific manner, 2) RNA polymerase (nucleotidyltransferase) catalyzing the conversion of oligoribonucleotides to polyribonucleotides, 3) sequence specific endoribonuclease. (This latter activity is also referred to as RNA restriction endonuclease or endoribonuclease activity.)
REFERENCES:
patent: 0291533 (1987-12-01), None
patent: 8804300 (1988-06-01), None
Lieber et al, Selection of Efficient Cleavage Sites in Target RNAs by Using a Ribozyme Expression Library, Jan. 1995, Molecular and Cellular Biology, vol. 15, No. 1, pp. 540-551.*
Guerrier-Takada et al., The RNA Moiety of Ribonuclease P is the Catalytic Subunit of the Enzyeme, Dec. 1983, Cell, vol. 35, pp. 849-857.*
A. D. M. van Mansfeld et al., “Recognition sequence of bacteriophage TX174 gene A protein—an initiator of DNA replication,” Nature 288:301, 1980.
Altman, “Ribonuclease P: An Enzyme with a Catalytic RNA Subunit”,Advances in Enzymology and Related Areas of Mol. Biol., 1989.
Bass and Cech, “Specific Interaction Between the Self-Splicing RNA of Tetrahymena and Its Guanosine Substrate: Implications for Biological Catalysis by RNA,”Nature, vol. 308, No. 5962, pp. 820-826, 1984.
Bass and Cech,Biohemistry, vol. 25, p. 4473-4477, Aug. 1986.
Been and Cech, “One Binding Site Determines Sequence Specificity of Tetrahymena Pre-rRNA Self-Splicing, Trans-Splicing and RNA Enzyme Activity,”Cell47:207-216 (1986).
Been and Cech, “Sites of Circulation of the Tetrahymena rRNA IVS are Determined by Sequence and Influenced by Position and Secondary Structure,”Nucleic Acids Research, vol. 13, No. 23, 1985, p. 8389 (Dec. 9, 1985).
Been et al., 239Science1412, 1988.
BRL Catalog (1983), p. 21.
BRL Catalogue, pp. 17, 20 and 21, 1985.
Burke et al., “Role of Conserved Sequence Elements 9L and 2 in Self-Splicing of the Tetrahymena Ribosomal RNA Precursor,”Cell, vol. 45, 167-176, Apr. 1986.
Buzayan et al., “Non-enzymatic cleavage and ligation of RNAs complementary to a plant virus satellite RNA,”Nature323:349-362 (1986).
Buzayan et al., “Satellite Tobacco Ringspot Virus RNA: A Subset of the RNA Sequence is Sufficient for Autolytic Processing,”Proc. Natl. Acad. Sci. USA, vol. 83, p. 8859-8862, Dec. 1986.
Castanotto et al., “Biological and Functional Aspects of Catalytic RNAs,”Critical Review in Eukaryotic Gene Expression2:331-357 (1992).
Cech and Bass, “Biological Catalysis by RNA,”Ann. Rev. Biochem., 1986, 55:599-629, Jul. 7, 1986.
Cech et al., “Secondary Structure of the Tetrahymena Ribosomal RNA Intervening Sequence: structural Homology with Fungal Mitochondrial Intervening Sequences,”Proc. Natl. Acad. Sci USA, vol. 80, pp. 3903-3907, Jul. 1983.
Cech, “A Model for the RNA-Catalyzed Replication of RNA,”Proc. Natl. Acad. Sci. USA, vol. 83, pp. 4360-4363, Jun. 1986.
Cech, “Mechanism of Self-Splicing of the Ribosomal RNA Precursor of Tetrahymena,”Proceedings of The Robert A. Welch Foundation Conferences on Chemical Research XXIX, Nov. 1985, Houston, TX.
Cech, “RNA as an Enzyme,”Scientific American, vol. 254, No. 11, Nov. 1986.
Cech, “Self-Splicing RNA: Implications for Evolution,”International Review of Cytology, vol. 93, p. 4-22, 1985.
Cech, “The Generality of Self-Splicing RNA: Relationship to Nuclear mRNA Splicing,”Cell, vol. 44, p. 207-210, 1986.
Cech, 236Science1532, 1987.
Darnell,Molecular Cell Biology, 1986, pp. 355, 1145-1148.
Davies et al., “Making Ends Meet: A Model for RNA Splicing in Fungal Mitochondria,”Nature, vol. 300, 23/30 Dec. 1982, p. 719.
Ehrenman et al., “Processing of Phage T4 RNA is analogous to the eukaryotic group I splicing pathway,”Proc. Natl. Acad. Sci. . USA, vol. 83, pp. 5875-5879, 1986.
Forster et al., “Self-cleaving viroid and newt RNAs may only be active as dimers,”Nature334:265-267 (1988).
Forster et al., 49Cell211, 1987.
Forster et al., 50Cell9, 1987.
Foster and Altman, “External Guide Sequences for an RNA Enzyme, ”Science249:783-786 (1990).
Garriga and Lambwitz, “RNA Splicing in Neurospora Mitochondria: Self-Splicing of a Mitochondrial Intron In Vitro,”Cell, vol. 38, 631-641 1984.
Garriga et al., “Mechanism of Recognition of the 5′ Splice Site in Self-Splicing Group I Introns,”Nature, vol. 322, Jul. 1986, p. 86.
Gerda van der Horst and Tabak, “Self-Splicing of Yeast Mitochondrial Ribosomal and Messenger RNA Precursors,”Cell, vol. 40, pp. 759-766, 1985.
Gerlach et al., 151Virology172, 1986.
Gerlach et al., “Construction of a plant disease resistance gene from the satellite RNA of tabacco ringspot virus,”Nature328:802-805 (1987).
Guerrier-Takada and Altman, “Catalytic Activity of an RNA Molecule Prepared by Transcription in vitro,”Science, vol. 223, No. 4631, Jan. 1984, p. 285.
Guerrier-Takada et al., “Metal Ion Requirements and Other Aspects of the Reaction Catalyzed by M1 RNA, the RNA Subunit of Ribonuclease P fromEscherichia coli,” Biochemistry25:1509-1515 (1986).
Guerrier-Takada et al., “The RNA Moiety of Ribonuclease P is the Catalytic Subunit of the Enzyme,”Cell, vol. 35, p. 849-857, Dec. 1983.
Guerrier-Takada et al., 38Cell219, 1984.
Haseloff and Gerlach, 344Nature585, 1988.
Hutchins et al., “Self-cleavage of Plus and Minus RNA Transcripts of Avocado Sunblotch Viroid,”Nucleic Acids Research,, vol. 14, No. 9, 1986, p. 3627-3640.17.
Inoue and Cech, “Secondary Structure of the Circular Form of the Tetrahymena rRNA Intervening Sequence: A Technique for RNA Structure Analysis Using Chemical Probes and Reverse Transcriptase,”Proc. Natl. Acad. Sci. USA, vol. 82, pp. 648-652, Feb. 1985.
Inoue et al., “Intermolecular Exon Ligation of the rRNA Precursor of Tetrahymena: Oligonucleotides Can Function as a 5′ Exons,”Cell, vol. 43, 431-437, Dec. 1985.
Inoue et al., “New Reactions of the Ribosomal RNA Precursor of Tetrahymena and the Mechanism of Self-Splicing,”J. Mol. Biol., (1986) 189, p. 143-165.
Jacquier and Rosbash, “Efficient Trans-splicing of a Yeast Mitochondrial RNA Group II Intron Implicates a Strong 5′ Exon-Intron Interaction,”Science, vol. 234, pp. 1099-1104, 1986.
Jacquier et al., 50Cell17, 1987.
Jarrell et al., 263J. Biol. Chem.3432, 1988.
Kazakov and Altman, “A trinucleotide can promote metal ion-dependant specific cleavage of RNA,”Proc. Natl. Acad. Sci. USA89:7939-7943 (1992).
Kruger et al. “Self-Splicing RNA: Autoexcision and Autocyclization of the Ribosomal RNA Intervening Sequence of Tetrahymena,”Cell, vol. 31, 147-157, Nov. 1982.
Lambowitz, 56Cell323, 1989.
Marsh and Pace, “Ribonuclease P Catalysis Differs from Ribonsomal RNA Self-Splicing,”Science, vol. 229, No. 4708, Jul. 1985, p. 79.
McClain et al., “Model Substrates for an RNA Enzyme,”Science238:527-530 (1987).
Michel and Dujon, “Conservation of RNA Secondary Structures in Two Intron Families Including Mitochondrial-, Chloroplast- and Nuclear-Encoded Members,”The EMBO Journal, vol. 2, No. 1, pp. 33-38, 1983.
Nirenberg and Leder, “RNA Codewords and Protein Synthesis,”Science145:1399-1407 (1964).
Peebles et al., “A Self-Splicing RNA Excises an Intron Lariat,”Cell, vol. 44, pp. 213-223, 1986.
Perea and Jacq, “Role of the 5′ Hairpin Structure in the Splicing Accuracy of the Fourth Intron of the Yeast Cob-Box Gene,”The EMBO Journal, vol. 4, No. 12, pp. 3281-3288, 1985.
Pharmacia Catalog (1984), p. 35.
Podhajska and Szybalski, “Conversion of the Fok I endonuclease to a universal restriction enzyme: cleavage of phage M13mp7 DNA at predetermined sites,” Gene 40:175, 1985.
Price and Cech, “Coupling of Tetrahymena Ribosomal RNA Splicing to B- Galactosidase Expression inEscherichia coli,” Science, vol. 228, pp. 719-722, 1985.
Price et al.,Nuc. Acids Res., vol. 13, p. 1871-1889, Mar. 1985).
Prody et al., “Autolytic Processing of
Been Michael D.
Cech Thomas R.
Zaug Arthur J.
Brusca John S.
Competitive Technologies Inc.
McDonnell & Boehnen Hulbert & Berghoff
LandOfFree
RNA ribozyme polymerases, dephosphorylases, restriction... does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with RNA ribozyme polymerases, dephosphorylases, restriction..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and RNA ribozyme polymerases, dephosphorylases, restriction... will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-3303777