RNA interference mediating small RNA molecules

Chemistry: molecular biology and microbiology – Micro-organism – tissue cell culture or enzyme using process... – Preparing compound containing saccharide radical

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C435S006120, C514S04400A, C536S023100, C536S024500

Reexamination Certificate

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07056704

ABSTRACT:
Double-stranded RNA (dsRNA) induces sequence-specific post-transcriptional gene silencing in many organisms by a process known as RNA interference (RNAi). Using aDrosophilain vitro system, we demonstrate that 19–23 nt short RNA fragments are the sequence-specific mediators of RNAi. The short interfering RNAs (siRNAs) are generated by an RNase III-like processing reaction from long dsRNA. Chemically synthesized siRNA duplexes with overhanging 3′ ends mediate efficient target RNA cleavage in the lysate, and the cleavage site is located near the center of the region spanned by the guiding siRNA. Furthermore, we provide evidence that the direction of dsRNA processing determines whether sense or antisense target RNA can be cleaved by the produced siRNP complex.

REFERENCES:
patent: 5578716 (1996-11-01), Szyf et al.
patent: 5580859 (1996-12-01), Felgner et al.
patent: 5770580 (1998-06-01), Ledley et al.
patent: 5908779 (1999-06-01), Carmichael et al.
patent: 5972704 (1999-10-01), Draper et al.
patent: 6225290 (2001-05-01), German et al.
patent: 6475726 (2002-11-01), Tally et al.
patent: 6531647 (2003-03-01), Baulcombe et al.
patent: 2002/0086356 (2002-07-01), Tuschl et al.
patent: 2002/0114784 (2002-08-01), Li et al.
patent: 2002/0132257 (2002-09-01), Giordano et al.
patent: 2002/0137210 (2002-09-01), Churikov
patent: 2002/0160393 (2002-10-01), Symonds et al.
patent: 2003/0068301 (2003-04-01), Draper et al.
patent: 2003/0108923 (2003-06-01), Tuschl et al.
patent: 2003/0140362 (2003-07-01), Macejak et al.
patent: 2003/0148985 (2003-08-01), Morrissey et al.
patent: 2003/0171311 (2003-09-01), Blatt et al.
patent: 2003/0190654 (2003-10-01), Heidenreich et al.
patent: 2003/0206887 (2003-11-01), Morrissey et al.
patent: 2004/0038921 (2004-02-01), Kreutzer et al.
patent: 2004/0054156 (2004-03-01), Draper et al.
patent: 2 359 180 (2001-07-01), None
patent: 0 983 370 (2003-09-01), None
patent: 2 349 885 (2000-11-01), None
patent: 2 362 885 (2001-12-01), None
patent: 2 370 275 (2002-06-01), None
patent: WO 94/01550 (1994-01-01), None
patent: WO 97/11170 (1997-03-01), None
patent: WO 99/32619 (1999-07-01), None
patent: WO 99/49029 (1999-09-01), None
patent: WO 99/53050 (1999-10-01), None
patent: WO 99/61631 (1999-12-01), None
patent: WO 00/01846 (2000-01-01), None
patent: WO 00/32619 (2000-06-01), None
patent: 00/44895 (2000-08-01), None
patent: WO 00/44895 (2000-08-01), None
patent: WO 00/63364 (2000-10-01), None
patent: WO 00/63364 (2000-10-01), None
patent: WO 01/75164 (2001-10-01), None
patent: WO 01/75164 (2001-10-01), None
patent: WO 01/92513 (2001-12-01), None
patent: WO 02/44321 (2002-06-01), None
patent: WO 02/055692 (2002-07-01), None
patent: WO 02/059300 (2002-08-01), None
patent: WO 02/059300 (2002-08-01), None
patent: WO 03/029459 (2003-04-01), None
patent: WO 03/033700 (2003-04-01), None
patent: WO 03/099298 (2003-12-01), None
Elbashir et al., Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells, May 2001, Nature, vol. 411, pp. 494-498.
Elbashir et al., RNA interference is mediated by 21- and 22-nucleotide RNAs, Jan. 2001, Genes & Development, vol. 15, pp. 188-200.
Elbashir et al., Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate, 2001, The EMBO Journal, vol. 20, No. 23, pp. 6877-6888.
U.S. Appl. No. 60/130,377, filed Apr. 21, 1999, Pachuk et al.
U.S. Appl. No. 60/279,661, filed Mar. 30, 2001, Tuschl.
Press Release, Nov. 15, 2001, AGY Therapeutics Announces Study Demonstrating Utility of RNA Interference in Mammalian Cells for CNS Drug Discovery.
Reviews, “Antisense oligonucleotides: towards clinical trials”, Oct. 1996, vol. 4, pp. 376-387.
Ahlquist, “RNA-Dependent RNA Polymerases, Viruses, and RNA Silencing”, SCIENCE, vol. 296, May 17, 2002, pp. 1270-1273.
Anderson, “Human gene therapy”, NATURE, vol. 392, Apr. 30, 1996, pp. 25-31.
Bahramian et al., “Transcriptional and Posttranscriptional Silencing of Rodent α1(I) Collagen by a Homologous . . . ”, Molecular and Cellular Biology, Jan. 1999, p. 274-283.
Steinberg, “MicroRNA Shows Macro Potential”, The Scientist, vol. 17, Issue 12, 22, Jun. 16, 2003, p. 1-9.
Billy et al., “Specific interference with gene expression induced by long, double-stranded RNA in mouse embryonal . . . ”, PNAS, Dec. 4, 2001, vol. 98, No. 25, pp. 14428-14433.
Bosher et al., “RNA interference: genetic wand and genetic watchdog”, Nature Cell Biology, vol. 2, Feb. 2000, pp. E31-E36.
Branch, “A good antisense molecule is hard to find”, TIBS 23, Feb. 1998, pp. 45-50.
Brummelkamp et al., “A System for Stable Expression of Short Interfering RNAs in Mammalian Cells”, SCIENCEXPRESS, Mar. 21, 2002, pp. 1-6.
Caplen et al., “Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems”, PNAS, Aug. 14, 2001, vol. 98, No. 17, pp. 9742-9747.
Carmell et al., “The Argonaute family: tentacles that reach into RNAI, developmental control, stem cell maintenance, and tumorigenesis”, Genes & Development, 16: 2733-2742.
Castanotto et al., “Functional siRNA expression from transfected PCR products”, RNA (2002), 8: 1454-1460.
Chiu et al., “siRNA function in RNAi: A chemical modification analysis”, RNA (2003), 9: 1034-1048.
Chiu et al., “RNAi in Human Cells: Basic Structural and Functional Features of Small Interfering RNA”, Molecular Cell, vol. 10, 549-561, Sep. 2002.
Clemens et al., “Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways”, PNAS, Jun. 6, 2000, vol. 97, No. 12, 6499-6503.
Clemens et al., “The Double-Stranded RNA-Dependent Protein Kinase PKR: Structure and Function”, Journal of Interferon and Cytokine Research, 17:503-524 (1997).
Corsi et al., “Caenorhabditis elegans Twist plays an essential role in non-striated muscle development”, DEVELOPMENT 127, 2041-2051 (2000).
Devroe et al., “Retrovirus-delivered siRNA”, BMC Biotechnology, 2002, 2, pp. 1-5.
Dichoso et al., “The MADS-Box Factor CeMEF2 is not Essential for Caenorhabditis elegans Myogenesis and Development”, Developmental Biology 223, 431-440 (2000).
Elbashir et al., “Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate”, The Embo Journal, vol. 20, No. 23, pp. 6877-6888, 2001.
Elbashir et al., “Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells”, NATURE, vol. 411, May 24, 2001.
Elela et al., Depletion of yeast Rnase III blocks correct U2 3′ end formation and results in polyadenylated but functional U2 snRNA, The Embo Journal, vol. 17, No. 13, pp. 3738-3746, 1998.
Escobar et al., “RNAi-mediated oncogene silencing confers resistance to crown gall tumorigensis”, PNAS, Nov. 6, 2001, vol. 98, No. 23, 13437-13442.
Filippov et al., “A novel type of RNase III family proteins in eukaryotes”, GENE 245 (2000) 213-221.
Gonczy et al., Functional genomic analysis of cell divsion in C.elegans using RNAi of genes on chromosome III, NATURE, vol. 408, Nov. 16, 2000, 331-336.
Grishok et al., “Target dependent accumulation of small RNAs during RNAi in C. elegans”, International C. elegans Meeting 2001, 307.
Grishok and Mello, VI. RNAi and Development References, Abstract, pp. 340-360.
Hammond et al., “Argonaute2, a Link Between Genetic and Biochemical Analyses of RNAi”, SCIENCE, Aug. 10, 2001, vol. 293, pp. 1146-1150.
Hsieh et al., “The RING finger/B-Box factor TAM-1 and a retinoblastoma-like protein LIN-35 modulate context-dependent gene silencing in Caenorhabditis elegans”, Genes & Development, 13:2958-2970. (1990).
Hsieh et al., “Recognition and Silencing of Repeated DNA”, Annu. Rev. Genet. 2000, 34, 187-204.
Hutvagner et al., “Detailed Characterization of the p

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