Ratio-based oligonucleotide probe selection

Details Ratio-based oligonucleotide probe selection Ratio-based oligonucleotide probe selection

2006-03-15

2009-06-23

Brusca, John S (Department: 1631)

Data processing: measuring, calibrating, or testing

Measurement system in a specific environment

Biological or biochemical

C435S006120

Reexamination Certificate

active

07552013

ABSTRACT:
Disclosed herein are methods of selecting probes to target nucleic acid sequences, methods of making oligonucleotide arrays comprising such probes, and methods of using such arrays. Also, described herein are oligonucleotide arrays comprising probes selected by a method of the invention.

REFERENCES:
patent: 5474796 (1995-12-01), Brennan
patent: 5968740 (1999-10-01), Fodor et al.
patent: 5985551 (1999-11-01), Brennan
patent: 6001311 (1999-12-01), Brennan
patent: 6040138 (2000-03-01), Lockhart et al.
patent: 6210894 (2001-04-01), Brennan
patent: 6228575 (2001-05-01), Gingeras et al.
patent: 6268152 (2001-07-01), Fodor et al.
patent: 6284460 (2001-09-01), Fodor et al.
patent: 6344316 (2002-02-01), Lockhart et al.
patent: WO 99/13105 (1999-03-01), None
patent: WO 01/05935 (2001-01-01), None
patent: WO 01/06013 (2001-01-01), None
Alizadeh, A., et al., “Distinct Types of Diffuse Large B-cell Lymphoma Identified by Gene Expression Profiling”,Nature, vol. 403, 2000, p. 503-511.
Beiβbarth, T., et al., “Processing and Quality Control of DNA Array Hybridization Data”,Bioinformatics, vol. 16, No. 11, 2000, p. 1014-1022.
Duggan, D., et al., “Expression Profiling Using cDNA Microarrays”,Nature Genetics Supplement, vol. 21, 1999, p. 10-14.
Li, F., et al., “Selection of Optimal DNA Oligos for Gene Expression Arrays”,Bioinformatics, vol. 17, No. 11, 2001, p. 1067-1076.
Lipshutz, R., et al., “High Density Synthetic Oligonucleotide Arrays”,Nature Genetics Supplement, vol. 21, 1999, p. 20-24.
Lockhart, D., et al., “Expression Monitoring by Hybridization to High-Density Oligonucleotide Arrays”,Biotechnology, vol. 14, No. 3, 1996, p. 1675-1680.
Manduchi, E., et al., “Generation of Patterns from Gene Expression Data by Assigning Confidence to Differentially Expressed Genes”,Bioinformatics, vol. 16, No. 8, 2000, p. 685-698.
Ramakrishnan, R., et al., “An Assessment of Motorola CodeLink™ Microarray Performance for Gene Expression Profiling Applications”,Nucleic Acids Research, vol. 30, No. 7, 2002, p. 1-12.
Tomiuk, S., et al., “Microarray Probe Selection Strategies”,Briefings in Bioinformatics, vol. 2, No. 4, 2001, p. 329-340.
Yue, H., et al., “An Evaluation of the Performance of cDNA Microarrays for Detecting Changes in Global mRNA Expression”,Nucleic Acids Research, vol. 29, No. 8, 2001, p. E41-1-E41-9.

Affiliated with

Also associated with

Rating

Ratio-based oligonucleotide probe selection does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Ratio-based oligonucleotide probe selection, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Ratio-based oligonucleotide probe selection will most certainly appreciate the feedback.

Rate now

Comments { 0 }

Profile ID: LFUS-PAI-O-4101274