Rapid genotyping analysis and the device thereof

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C435S091100, C435S287200, C536S023100, C536S024100

Reexamination Certificate

active

07732138

ABSTRACT:
The present invention discloses the use of Allele-Specific-Oligonucleotide (ASO) as a detection assay for human HLA classification. Using Reversed-Dot-Blotting format and flow through hybridization process, more efficient, faster and less expensive HLA classification can be achieved. A simplified procedure for HLA genotyping is also described. This invention further provides a Single Nucleotide Polymorphism (SNP)-based DNA fingerprining method for rapid and accurate genotyping, identification as well as DNA analyses of genetic data from human beings and different organisms. In addition this invention also discloses a new device for rapid and sensitive analyses of nucleic acids, proteins and other analysts for diagnosis.

REFERENCES:
patent: 5310650 (1994-05-01), McMahon et al.
patent: 5527673 (1996-06-01), Reinhartz et al.
patent: 5550039 (1996-08-01), Trachtenberg
patent: 5741647 (1998-04-01), Tam
patent: 6020187 (2000-02-01), Tam
patent: 6670124 (2003-12-01), Chow et al.
patent: 6818393 (2004-11-01), Mach et al.
patent: 7132239 (2006-11-01), Livak
patent: 2004/0185452 (2004-09-01), Chen et al.
patent: 2008/0206773 (2008-08-01), Tam
patent: 1804043 (2006-07-01), None
patent: 1746168 (2009-04-01), None
patent: WO 03/100095 (2003-12-01), None
patent: WO 2004/023092 (2004-03-01), None
patent: WO 2007/115491 (2007-10-01), None
patent: PCT/CN2008/070671 (2008-04-01), None
patent: WO 2009/044370 (2009-04-01), None
Buck et al (Biotechniques (1999) 27(3):528-536).
HLA-DNA Tech, “Application Instruction for HLA DQB1 Genotyping Kit”, printed 2008, pp. 1-5.
Brightwell et al., Aug. 2002, “SNP genotyping using a simple and rapid single-tube modification of ARMS illustrated by analysis of 6 SNPs in a population of males with FRAXA repeat expansions”, Molecular and Cellular Probes, vol. 16(4):297-305.
Chakraborty et al., Jul. 1996, “Paternity exclusion by DNA markers: effects of paternal mutations”, Journal of Forensic Science, vol. 41(4): 671-677.
Edwards et al., Oct. 1991, “DNA typing and genetic mapping with trimeric and tetrameric landem repeats”, American Journal of Human Genetics, vol. 49(4): 746-756.
Gill et al., Dec. 1985, “Forensic application of DNA ‘fingerprints’”, vol. 318(6046): 577-579.
Robinson et al., Jan. 2003, “IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex”, Nucleic Acids Research, vol. 31(1):311-314.
Robinson et al., Jan. 2001, “IMGT/HLA Database—a sequence database for the human major histocompatibility complex”, Nucleic Acids Research, vol. 29(1):210-213.
Thomas, E. Donnall, Sep. 1983, “Marrow Transplantation for Malignant Diseases”, Journal of Clinical Oncology, vol. 1(9): 517-531.
Weiss, Kenneth M., Jul. 1998, “In search of human variation”, Genome Research, vol. 8(7): 691-697.
Zhao et al., Jul. 1998, “Mapping of complex traits by single-nucleotide polymorphisms”, American Journal of Human Genetics, vol. 63(1): 225-240.
Alonso et al., 2006, “Usefulness of Microchip Electrophoresis for the Analysis of Mitochonrial DNA in Forensic and Ancient DNA Studies”, Electrophoresis, vol. 27(24): 5101-9.
Bouakaze et al., Nov. 2007, “First Successful Assay of Y-SNP Typing by SNaPshot minisequencing on Ancient DNA”, International Journal of Legal Medicine, vol. 121(6): 493-499.
Budowle et al., Mar. 2005, “Forensic Aspects of Mass Disasters: Strategic Considerations for DNA-based Human Identification”, Legal Medicine, vol. 7(1):230-243.
Divine, Anna-Maria, and Allen, Marie, 2005, “A DNA Microarray System for Forensic SNP analysis”, Forensic Science International, vol. 154(1): 111-121.
Lee et al., Mar. 2005, “Selection of Twenty-Four Highly Informative SNP Markers for Human Identification and Paternity Analysis in Koreans”, Forensic Science International, vol. 148(2-3): 107-112.
Onofori et al., May 2007, “Y-Chromosome Genetic Structure in Sub-Apennine Populations of Central Italy by SNP and STR Analysis”, International Journal of Legal Medicine, vol. 121(3): 234-237.
Pakstis et al., May 2007, “Candidate SNPs for a Universal Individual Identification Panel”, Human Genetics, vol. 121 (3-4): 305-317.
U.S. Appl. No. 10/291,168, filed Nov. 7, 2002, Tam, Joseph Wing On.
U.S. Appl. No. 10/293,248, filed Nov. 9, 2002, Tam, Joseph Wing On.
U.S. Appl. No. 12/044,126, filed Mar. 7, 2008, Tam, Joseph Wing On.
U.S. Appl. No. 60/345,948, filed Nov. 7, 2001, Tam, Joseph Wing On.
U.S. Appl. No. 60/910,208, filed Apr. 4, 2007, Tam, Joseph Wing On.
Bunce, M. et al., 1995, “Phototyping: Comprehensive DNA Typing for HLA-A,B,C, DRB1, DRB3, DRB4, DRB5, & DQB1 by PCR with 144 Primer Mixes Utilizing Sequence-Specific Primers”, Tissue Antigens, vol. 46:355-367.
Dixon et al., 2005, “Validation of a 21-locus Autosomal SNP Multiplex for Forensic Identification Purposes”, Forensic Science International vol. 154:62-72.
Huang et al., 2002, “Mutation patterns at Dinucleotide microsatellite loci in humans”, American Journal of Human Genetics, vol. 70: 625-634.
Inagaki, S. et. al., 2004, “A new 39-plex analysis method for SNPs including 15 blood group loci”, Forensic Science International vol. 144:45-57.
Kaneshige, T. et al., Feb. 1993, “Rapid and Practical HLA Class II Genotyping by Reversed Dot Blotting”, Transplantation Proceedings, vol. 25(1): 194-198.
Kidd et al., 2006, “Developing a SNP panel for forensic identification of individuals”, Forensic Science International, vol. 164: 20-32.
Lessig et al., 2005, “Y-SNP-genotyping—a new approach in forensic analysis”, Forensic Science International, vol. 154: 128-136.
Li et al., 2006, “SNP genotyping by multplex amplification and microarrays assay for forensic application”, Forensic Science International, vol. 162: 74-79.
Mach, B. et al., 1990, “Diversity and Regulation of MHC Class II Genes”, In Molecular Biology of HLA Class II Antigens. ed. Silver J (CRC, Boca Raton, FL), pp. 201-223.
Michou et al., Apr. 28, 2006, “Validation of the Reshaped Shared Epitope HLA-DRB1 Classification in Rheumatoid Arthritis”, Arthritis Research and Therapy, vol. 8(3): 1-6.
Reich et al., 2002, “Human genome sequence variation and the influence of gene history, mutation and recombination”, Nature Genetics, vol. 32: 135-140.
Sanchez et al., 2006, “A multiplex assay with 52 single nucleotide polymorphisms for human identification”, Electrophoresis vol. 27: 1713-1724.
Danyl Biotech, Aug. 11, 2003, “510(k) Summary”, Submitted in accordance with the requirements of SMDA 1990 and 21 CFR 807.92.
Genovision, Oct. 27, 2006, “OLERUP SSP™ HLA Products From GenoVision: Full Product Review”.
HLA-DNA-TECH, “Application Instruction for HLA DQB1 Genotyping Kit”.
PCT International Search Report for International Application No. PCT/CN2007/001108, filed Apr. 4, 2007, Dated Aug. 16. 2007.
PCT Written Opinion of the International Searching Authority for International Application No. PCT/CN2007/001108, filed Apr. 4, 2007, Dated Aug. 16, 2007.
U.S. Office Action for Tam, Joseph Wing On, U.S. Appl. No. 10/291,168, filed Nov. 7, 2002, Dated Oct. 25, 2004.
U.S. Office Action for Tam, Joseph Wing On, U.S. Appl. No, 10/291,168, filed Nov. 7, 2002, Dated Mar. 21, 2005.
U.S. Office Action for Tam, Joseph Wing On, U.S. Appl. No. 10/291,168, filed Nov. 7, 2002, Dated Jan. 4, 2006.
U.S. Office Action for Tam, Joseph Wing On, U.S. Appl. No. 10/293,248, filed Nov. 9, 2002, Dated Sep. 7, 2007.
Allen et al., 2005, “Universal Tag Arrays in Forensic SNP Analysis”, Methods in Molecular Biology, vol. 297:141-154.
Mitiaeva et al., Mar. 2007, “Development and Application of Hydrogel Oligonucleotide Microships for Forensic-Medical Personal Identification as Illustrated by ABO Locus&#

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Rapid genotyping analysis and the device thereof does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Rapid genotyping analysis and the device thereof, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Rapid genotyping analysis and the device thereof will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-4173107

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.