Pyrophosphorolysis and incorporation of nucleotide method...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C435S007800, C435S091200, C435S091500, C436S173000, C436S501000, C536S026110, C536S027400, C536S028500

Reexamination Certificate

active

07090975

ABSTRACT:
Processes are disclosed using the depolymerization of a nucleic acid hybrid and incorporation of a suitable nucleotide to qualitatively and quantitatively analyze for the presence of predetermined nucleic acid target sequences. Applications of those processes include the detection of single nucleotide polymorphisms, identification of single base changes, genotyping, medical marker diagnostics, mirosequencing, and.

REFERENCES:
patent: 4246340 (1981-01-01), Lundin et al.
patent: 4303752 (1981-12-01), Kolehmainen et al.
patent: 4331762 (1982-05-01), Nakajima et al.
patent: 4338395 (1982-07-01), Leon et al.
patent: 4352881 (1982-10-01), Inagawa et al.
patent: 4357420 (1982-11-01), Bostick et al.
patent: 4368261 (1983-01-01), Klose et al.
patent: 4371611 (1983-02-01), Fusee
patent: 4394445 (1983-07-01), Nix et al.
patent: 4415655 (1983-11-01), De Castro et al.
patent: 4438124 (1984-03-01), Meister et al.
patent: 4443594 (1984-04-01), Buckmann
patent: 4446231 (1984-05-01), Self
patent: 4460684 (1984-07-01), Bauer
patent: 4485177 (1984-11-01), Siedel et al.
patent: 4595655 (1986-06-01), Self
patent: 4683195 (1987-07-01), Mullis et al.
patent: 4683202 (1987-07-01), Mullis et al.
patent: 4735897 (1988-04-01), Vary et al.
patent: 4743561 (1988-05-01), Shaffar
patent: 4755458 (1988-07-01), Rabbani et al.
patent: 4800159 (1989-01-01), Mullis et al.
patent: 5229285 (1993-07-01), Kajiyama et al.
patent: 5356776 (1994-10-01), Kambara et al.
patent: 5389512 (1995-02-01), Sninsky
patent: 5391480 (1995-02-01), Davis et al.
patent: 5399491 (1995-03-01), Kacian et al.
patent: 5401837 (1995-03-01), Nelson
patent: 5403711 (1995-04-01), Walder et al.
patent: 5445933 (1995-08-01), Eadie et al.
patent: 5491133 (1996-02-01), Walder et al.
patent: 5494810 (1996-02-01), Barany et al.
patent: 5498523 (1996-03-01), Tabor et al.
patent: 5512439 (1996-04-01), Hornes et al.
patent: 5516663 (1996-05-01), Backman et al.
patent: 5530192 (1996-06-01), Murase et al.
patent: 5541311 (1996-07-01), Dahlberg et al.
patent: 5561044 (1996-10-01), Walker et al.
patent: 5573906 (1996-11-01), Bannwarth et al.
patent: 5579820 (1996-12-01), Hornes et al.
patent: 5582989 (1996-12-01), Caskey et al.
patent: 5622824 (1997-04-01), Koster
patent: 5648232 (1997-07-01), Squirrell
patent: 5660988 (1997-08-01), Duck et al.
patent: 5667964 (1997-09-01), Ho
patent: 5683877 (1997-11-01), Lu-Chang et al.
patent: 5691146 (1997-11-01), Mayrand
patent: 5723591 (1998-03-01), Livak et al.
patent: 5731146 (1998-03-01), Duck et al.
patent: 5736365 (1998-04-01), Walker et al.
patent: 5741635 (1998-04-01), Boss et al.
patent: 5763181 (1998-06-01), Han et al.
patent: 5766849 (1998-06-01), McDonough et al.
patent: 5786139 (1998-07-01), Burke et al.
patent: 5786183 (1998-07-01), Ryder et al.
patent: 5814491 (1998-09-01), Vijg et al.
patent: 5824517 (1998-10-01), Cleuziat et al.
patent: 5834202 (1998-11-01), Auerbach
patent: 5840873 (1998-11-01), Nelson et al.
patent: 5843660 (1998-12-01), Schumm et al.
patent: 5849547 (1998-12-01), Cleuziat et al.
patent: 5853981 (1998-12-01), Kondo et al.
patent: 5854033 (1998-12-01), Lizardi
patent: 5861242 (1999-01-01), Chee et al.
patent: 5863736 (1999-01-01), Haaland
patent: 5866337 (1999-02-01), Schon
patent: 5869252 (1999-02-01), Bouma et al.
patent: 5871902 (1999-02-01), Weininger et al.
patent: 5876924 (1999-03-01), Zhang et al.
patent: 5876930 (1999-03-01), Livak et al.
patent: 5876978 (1999-03-01), Willey et al.
patent: 5880473 (1999-03-01), Ginestet
patent: 5882856 (1999-03-01), Shuber
patent: 5885775 (1999-03-01), Haff et al.
patent: 5888819 (1999-03-01), Goelet et al.
patent: 5902722 (1999-05-01), Di Cesare et al.
patent: 6007987 (1999-12-01), Cantor et al.
patent: 6066483 (2000-05-01), Riggs et al.
patent: 6194556 (2001-02-01), Acton
patent: 6235480 (2001-05-01), Shultz
patent: 0 229 601 (1986-11-01), None
patent: 639 647 (1994-07-01), None
patent: 0 663 447 (1994-12-01), None
patent: 0 894 867 (1997-11-01), None
patent: 22055200 (1981-12-01), None
patent: WO 90/05530 (1990-05-01), None
patent: WO 91/17264 (1991-11-01), None
patent: WO 92/13963 (1992-08-01), None
patent: WO 94/25619 (1994-11-01), None
patent: WO 95/21938 (1995-08-01), None
patent: WO 96/41014 (1995-12-01), None
patent: WO 97/41256 (1997-11-01), None
patent: WO 98/13523 (1998-04-01), None
patent: WO 98/54362 (1998-04-01), None
patent: WO 98/28440 (1998-07-01), None
patent: WO 98/54362 (1998-12-01), None
patent: WO 99/46409 (1999-09-01), None
patent: WO 00/49179 (2000-08-01), None
patent: WO 00/49180 (2000-08-01), None
patent: WO 00/49181 (2000-08-01), None
patent: WO 00/49182 (2000-08-01), None
A.E. Sippel, “Purification and Characterization of Adenosine Triphosphate: Ribonucleic Acid Adenyltransferase fromEscherichia coli” Eur. J. Biochem. 37:31-40 (1973).
K. Chowdhury, N. Kaushik, V.N. Pandey and M.J. Modak, “Elucidiation of the Role of Arg 110 of Murine Leukemia Virus Reverse Transcriptase in the Catalytic Mechanism: Biochemical Characterization of Its Mutant Enzymes,”Biochemisty, 35:16610-16620 (1996).
S. Karamohamed, M. Ronaghi and P. Nyren, “Bioluminometric Method for Real-Time Detection of Reverse Transcriptase Activity”,Biotechniques, 24:302-306 (Feb., 1998).
B. Hove-Jensen, K.W. Harlow, C.J. King, R.L. Switzer,“Phosphoribosylpyrophosphate Syntetase ofEscherichia coli”, J. Biol. Chem., 261(15):6765-6771 (1986).
P. Nyren, S. Karamohamed and M. Ronaghi, “Detection of Single-Base Changes Using a Bioluminometric Primer Extension Assay”,Anal. Biochem., 244:367-373 (Jan. 15, 1997).
M. Ronaghi, S. Karamohamed, B. Pettersson, M. Uhlen and P. Nyren, “Real-Time DNA Sequencing Using Detection of Pyrophosphgate Release,”Anal. Biochem., 242:84-89 (1996).
T.A. Rozovskaya, V.O. Rechinsky, R.S. Bibilashvili, M.Y. Karpeisky, N.B. Tarusova, R.M. Khomutov, H.B.F. Dixon, “The Mechanism of Pyrophosphorolysis of RNA by RNA Polymerase”,Biochem. J., 224:645-650 (1989).
M.P. Deutscher and A. Kornberg, “Enzymatic Synthesis of Deoxyribonucleic Acid”,J. Biol. Chem., 244(11):3019-28 (1969).
J.D. Moyer and J.F. Henderson, “Nucleoside Triphosphate Specificity of Firefly Luciferase”,Anal. Biochem., 131:187-189 (1983).
C. Blondin, L. Serina, L. Weismuller, A. Gilles and O. Barzu, “Improved Spectrophotometric Assay of Nucleoside Monophosphate Kinase Activity Using the Pyruvate Kinase/Lactate Dehydrogenase Coupling System”,Anal. Biochem., 220:219-21 (1994).
Tabor and C.C. Richardson, “DNA Sequence Analysis With a Modified Bacteriophage T7 DNA Polymerase”,J. Biol. Chem., 265(14):8322-8328 (1990).
R.S. Chittock, J.-M. Hawronsky ,, J. Holah and C.W. Wharton, “Kinetic Aspects of ATP Amplification Reactions”,Anal. Biochem., 255:120-126 (Jan. 1, 1998).
Kung, et al., “Picogram Quantitation of Total DNA Using DNA-Binding Proteins in a Silicon Sensor-Based System”,Anal. Biochem., 187:220-227 (1990).
Srivastavan & Modak, “Enzymatic Activities Associated With Avian and Murine Retroviral DNA Polymerases,”J. Biol. Chem., 255(5):2000-2004 (1980).
Sano & Feix, “Terminal Riboadenylate Transferase fromEscherichia coli” (Characterization and Application)Eur. J. Biochem., 71:577-583 (1976).
Sabina, et al., “The Enzymatic Synthesis of 5-Amino-4 Imidazolecarboxamide Riboside Triphhosphate (ZTP),”Science, 223:1193-1195 (1984).
Parks & Agarwal inThe Enzymes, “Nucleoside Diphosphokinases,” vol. 9:307-333, P. Boyer Ed. (1973).
Shimofuruya & Suzuki, “Pyrimidine Nucleoside Monophosphate Kinase Isolated From Pig Brain Homogenate Catalyzes Disproportionation of Phosphate Between Two CD Molecules,”Biochem. Intl., 26(5):853-861 (1992).
Nyren, et al., “Detection of Single-Base Changes Using a Bioluminometric Primer Extension Assay”,Anal. Biochem., 244:267-373 (1997).
P. Bernard et al., “Homogeneous Multiplex Genotyping of Hemochromatosis Mutations With Fluorescent Hybridization Probes,”American Jou

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Pyrophosphorolysis and incorporation of nucleotide method... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Pyrophosphorolysis and incorporation of nucleotide method..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Pyrophosphorolysis and incorporation of nucleotide method... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-3652090

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.