Protein microarrays on mirrored surfaces for performing...

Chemistry: molecular biology and microbiology – Apparatus – Including measuring or testing

Reexamination Certificate

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C435S007100, C435S287100, C435S287200, C435S288700, C435S091500, C435S091500, C435S091500, C435S091500, C435S091500, C436S518000, C436S524000, C436S525000, C436S527000, C436S535000

Reexamination Certificate

active

07148058

ABSTRACT:
Provided are protein microarrays, their manufacture, use, and application. Protein microarrays in accordance with the present invention are useful in a variety preoteomic analyses. Various protein arrays in accordance with the present invention may immobilize large arrays of proteins that may be useful for studying protein-protein interactions to improve understanding of disease processes, facilitating drug discovery, or for identifying potential antigens for vaccine development. The protein array elements of the invention are native or modified proteins (e.g., antibodies or fusion proteins). The protein array elements may be attached directly to a organic functionalized mirrored substrate by a binding reaction between functional groups on the substrate (e.g., amine) and protein (e.g., activated carboxylic acid). Techniques for chemical blocking of the arrays are also provided. The invention contemplates spotting of array elements onto solid planar substrates, labeling of complex protein mixtures, and the analysis of protein binding to the array. The invention also enables the enrichment or purification, and subsequent sequencing or structural analysis of proteins that are identified as differential by the array screen. Kits including protein-binding microarrays for proteomic analysis in accordance with the present invention are also provided.

REFERENCES:
patent: 4963263 (1990-10-01), Kauvar
patent: 5091318 (1992-02-01), Anawis et al.
patent: 5133866 (1992-07-01), Kauvar
patent: 5340474 (1994-08-01), Kauvar
patent: 5409611 (1995-04-01), Kauvar
patent: 5478527 (1995-12-01), Gustafson et al.
patent: 5482867 (1996-01-01), Barrett et al.
patent: 5556942 (1996-09-01), Kauvar et al.
patent: 5567317 (1996-10-01), Kauvar
patent: 5599903 (1997-02-01), Kauvar et al.
patent: 5624711 (1997-04-01), Sundberg et al.
patent: 5763570 (1998-06-01), Kauvar et al.
patent: 5767086 (1998-06-01), Kauvar et al.
patent: 5786336 (1998-07-01), Kauvar et al.
patent: 5831005 (1998-11-01), Zuckerman et al.
patent: 5831070 (1998-11-01), Pease et al.
patent: 5955432 (1999-09-01), Kauvar et al.
patent: 5965695 (1999-10-01), Simon et al.
patent: 6013462 (2000-01-01), Kauvar et al.
patent: 6221994 (2001-04-01), Galbiati et al.
patent: 6329209 (2001-12-01), Wagner et al.
patent: 6406921 (2002-06-01), Wagner et al.
patent: 197 41 716 (1999-03-01), None
patent: WO 89/09088 (1989-10-01), None
patent: WO 91/06356 (1991-05-01), None
patent: WO 92/10757 (1992-06-01), None
patent: WO 98/31839 (1998-07-01), None
patent: WO 98/42730 (1998-10-01), None
patent: WO 98/53304 (1998-11-01), None
patent: WO 98/59360 (1998-12-01), None
patent: WO 99/48897 (1999-09-01), None
patent: WO 00/11208 (2000-03-01), None
patent: WO 01/01142 (2001-01-01), None
patent: WO 01/94946 (2001-12-01), None
Weetall, H. H., “Preparation of immobilized Proteins Covalently Coupled Through Silane Coupling Agents to Inorganic Supports”, 1993, Applied Biochemistry and Biotechnology, 41, 157-188. (NOTE: In PTO-1449 dated Jan. 27, 2003.).
Hruby, et al., “Synthesis of oligopeptide and peptidomimetic libraries”, Department of Chemistry, University of Arizona, Current Opinion in Chemical Biology, 1997, 1:114-119.
Ripka, et al., “Peptidomimetic design”, Department of Chemistry and School of Pharmacy, University of Wisconsin-Madison, Current Opinion in Chemical Biology, 1998, 2:441-452.
Al-Obeidi, et al., “Peptide and Peptidomimetic Libraries”, Molecular Diversity and Drug Design, Molecular Biotechnology, 1998, vol. 9, pp. 205-223.
Berry, et al., “Use of Antibody Fragments in Immunoaffinity Chromatography” Comparison of FV Fragments, VH Fragments and Paralog Peptides, Journal of Chromatography, Chrom. 23 869, 1992, pp. 239-245.
Chapman, et al., “Surveying for Surfaces that Resist the Absorption of Proteins”, Department of Chemistry and Chemical Biology, Harvard University, Received Mar. 3, 2000, pp. 8303-8304.
Houry, et al., “Identification of in Vivo Substrates of the Chaperonin GroEL”, Department of Cellular Biochemistry, Nature vol. 402, Nov. 11, 1999, pp. 147-154.
Kauvar, et al., “Paralog Chromatography”, Research Report, Terrapin Technologies, Inc. and Rice University, vol. 8, No. 2, 1990, pp. 204-206.
Martzen, et al., “A Biochemical Genomics Approach for Identifying Genes by the Activity of Their Products”, Reports, vol. 286, Nov. 5, 1999, pp. 1153-1155.
Rajur, et al., “Combinatorial Synthesis of N-Substituted α-Amino Acids on Sepharose” Lecture Programme and Abstract Book, Solid Phase Synthesis & Combinatorial Chemical Libraries, The European Peptide Society & BS/RSC Protein and Peptide Science Group, UK, Dates: Aug. 31-Sep. 4, 1999, Abstract.
“The Promise of Proteomics”, Nature, Macmillian Magazines Ltd, Dec. 16, 1999, vol. 402, Issue No. 402, p. 703.
Weetall, Preparation of immobilized proteins covalently coupled through silane coupling agents to inorganic support, 1993, vol. 41, 157-188.
“Redrawn Capillary Imaging Reservoir”, Nov. 10, 1999, p. 1, abstract only.
“Array for Generating Combinatorial Libraries”, May 17, 2001, p. 1, abstract only.
Falsey, et al., “Peptide and Small Molecule Microarray for High Throughput Cell Adhesion and Functional Arrays”, UC Davis Cancer Center, Bioconjugate Chem., Received Nov. 21, 2000, vol. 12, No. 3, pp. 346-353.
MacBeath, et al., “Printing Proteins as Microarrays for High-Throughput Funcation Determination”, Sep. 8, 2000, vol. 289, pp. 1760-1763.
Hergenrother, et al., “Small-Molecule Microarrays: Covalent Attachment and Screening of Alcohol-Containing Small Molecules on Glass Slides”, Department of Chemistry and Chemical Biology, Received on Apr. 22, 2000, vol. 122, No. 32, pp. 7849-7850.
“Device for Carrying Out an Almost Simultaneous Synthesis of a Plurality of Samples”, Dec. 29, 1999, p. 1, abstract only.
“Surface Plasmon Resonance Sensor for the Simultaneous Measurement of a Plurality of Samples in Fluid Form”, Nov. 25, 1999, p. 1, abstract only.
“The Array for the High-Throughput Synthesis, Screening and Characterization of Combinatorial Libraries, and Methods for Making the Array”, May 17, 2001, p. 1, abstract only.
Zhu et al., “Global Analysis of Protein Activities Using Proteome Chips”, Science, vol. 293, Sep. 14, 2001, pp. 2101-2105.
Fang, et al., “Membrane Protein Microarrays”, JACS Communications, Biochemical Technologies, Science and Technology Division, vol. 124, No. 11, Received Oct. 22, 2001, Published on Web Feb. 26, 2002, pp. 2394-2395.
Mecklenburg, Michael, “XNA on Gold™: a versatile microarray platform”, pp. 61-62, poster abstract.
Haab, et al, “Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions”, Genome Biology, vol. 2, No. 2, Received: Nov. 9, 2000, Revised: Dec. 5, 2000, Accepted: Dec. 13, 2000, pp. 0004.1-0004.13.
MacBeth et al., “Printing Small Molecules as Microarrays and Detecting Protein—Ligand Interactions en Masse” J. Am. Chem. Soc. 121:7967-7968, 1999.
Pirrung et al., “A General Method for the Spatailly Defied Imobilization of Biomolecules on Glass Surface Using ‘Caged’ Biotin” Bioconjugate Chem. 7:317-321, 1996.
European Search Report dated Mar. 4, 2006 from related European Application No. 03763248.6—PCT/US-321127.

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