Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical
Reexamination Certificate
2005-08-02
2005-08-02
Zeman, Mary K. (Department: 1631)
Data processing: measuring, calibrating, or testing
Measurement system in a specific environment
Biological or biochemical
C702S020000, C702S022000, C702S027000, C702S030000, C702S032000, C707S793000, C707S793000, C435S006120, C435S007100
Reexamination Certificate
active
06925389
ABSTRACT:
The invention describes a process for determining a biological state through the discovery and analysis of hidden or non-obvious, discriminatory biological data patterns. The biological data can be from health data, clinical data, or from a biological sample, (e.g., a biological sample from a human, e.g., serum, blood, saliva, plasma, nipple aspirants, synovial fluids, cerebrospinal fluids, sweat, urine, fecal matter, tears, bronchial lavage, swabbings, needle aspirantas, semen, vaginal fluids, pre-ejaculate.), etc. which is analyzed to determine the biological state of the donor. The biological state can be a pathologic diagnosis, toxicity state, efficacy of a drug, prognosis of a disease, etc. Specifically, the invention concerns processes that discover hidden discriminatory biological data patterns (e.g., patterns of protein expression in a serum sample that classify the biological state of an organ) that describe biological states.
REFERENCES:
patent: 4122343 (1978-10-01), Risby et al.
patent: 4697242 (1987-09-01), Holland et al.
patent: 4881178 (1989-11-01), Holland et al.
patent: 5136686 (1992-08-01), Koza
patent: 5352613 (1994-10-01), Tafas et al.
patent: 5649030 (1997-07-01), Normile et al.
patent: 5687716 (1997-11-01), Kaufmann et al.
patent: 5697369 (1997-12-01), Long, Jr. et al.
patent: 5716825 (1998-02-01), Hancock et al.
patent: 5790761 (1998-08-01), Heseltine et al.
patent: 5839438 (1998-11-01), Graettinger et al.
patent: 5905258 (1999-05-01), Clemmer et al.
patent: 5946640 (1999-08-01), Goodacre et al.
patent: 5974412 (1999-10-01), Hazlehurst et al.
patent: 6025128 (2000-02-01), Veltri et al.
patent: 6081797 (2000-06-01), Hitt
patent: 6128608 (2000-10-01), Barnhill
patent: 6157921 (2000-12-01), Barnhill
patent: 6295514 (2001-09-01), Agrafiotis et al.
patent: 6329652 (2001-12-01), Windig et al.
patent: 6427141 (2002-07-01), Barnhill
patent: 6558902 (2003-05-01), Hillenkamp
patent: 6571227 (2003-05-01), Agrafiotis et al.
patent: 6615199 (2003-09-01), Bowman-Amuah
patent: 6675104 (2004-01-01), Paulse et al.
patent: 2002/0046198 (2002-04-01), Hitt
patent: 2002/0138208 (2002-09-01), Paulse et al.
patent: 2002/0193950 (2002-12-01), Gavin et al.
patent: 2003/0054367 (2003-03-01), Rich et al.
patent: 2003/0077616 (2003-04-01), Lomas
patent: 2003/0134304 (2003-07-01), van der Greef et al.
patent: WO 93/05478 (1993-03-01), None
patent: WO 99/41612 (1999-08-01), None
patent: WO 99/47925 (1999-09-01), None
patent: WO 99/58972 (1999-11-01), None
patent: WO 00/49410 (2000-08-01), None
patent: WO 00/55628 (2000-09-01), None
patent: WO 01/20043 (2001-03-01), None
patent: WO 01/31579 (2001-05-01), None
patent: WO 01/31580 (2001-05-01), None
patent: WO 01/84140 (2001-11-01), None
patent: WO 02/059822 (2002-08-01), None
patent: WO 02/088744 (2002-11-01), None
patent: WO 03/031031 (2003-04-01), None
Lockhart, D.J. et al. Nature Jun. 15, 2000, vol. 405 pp. 827-836.
Roses, A.D. Nature Jun. 15, 2000 pp. 857-865.
Moler, E.J. et al. Physiol. Genomics Dec., 2000, vol. 4 pp. 109-126.
Liotta et al. Genetics, Oct. 1, 2000, vol. 1 pp. 48-56.
Jun Zhang,Dynamics and Formation of Self-Organizing Maps,in “Self-Organizing Map Formation: Foundations of Neural Computation,” Oct. 2001, pp. 55-67 (Klaus Obermayer & Terrence J. Sejnowski eds.).
Ricketts et al., “Towards the Automated Prescreening of Cervical Smears,” Mar. 11, 1992, 4 pages, Applications of Image Processing in Mass Health Screening, IEE Colloquium.
Cairns et al., “Towards the Automated Prescreening of Breast X-Rays,” Mar. 11, 1992, 5 pages, Applications of Image Processing in Mass Health Screening, IEE Colloquium.
Belic, “Neural Networks Methodologies for Mass Spectra Recognition,” pp. 374-380.
Zhang, “Combining Multiple Biomarkers in Clinical Diagnostics—A Review of Methods and Issues,” Tumor Markers: Physiology, Pathobiology, Technology, and Clinical Applicatin, 2002, 14 pages.
Jain et al., “Statistical Pattern Recognition: A Review,” IEEE Transactions On Pattern Analysis and Machine Intelligence, vol. 22, No. 1, Jan. 2000, pp. 4-37.
Hackett et al., “Rapid SELDI Biomarker Protein Profiling of Serum from Normal and Prostate Cancer Patients,” American Association for Cancer Research, vol. 41, Mar. 2000 (Abstract only), pp. 563-564.
Microsoft Press, Computer Dictionary: The Comprehensive Standard for Business, School, Library, and Home, Microsoft Press, 408.
Dhar et al., Seven Methods for Transforming Corporate Data Into Business Intelligence, Prentice Hall, pp. 52-76.
Reed, “Trends in Commercial Bioinformatics,” Oscar Gruss Biotechnology Review, Mar. 2000, 20 pages.
Gaskell, “Electrospray: Principles and Practice,”Journal of Mass Spectrometry,vol. 32, pp. 677-688 (1997), John Wiley & Sons, Ltd.
Lewis, “An Introduction to Classification and Regression Tree (CART) Analysis,” presented at 2000 Annual Meeting of the Society for Academic Emergency Medicine in San Francisco, California, pp. 1-14, 2000.
Hess et al., “Classification and Regression Tree Analysis of 1000 Consecutive Patients with Unknown Primary Carcinoma,”Clinical Cancer Research,vol. 5, pp. 3403-3410, Nov. 1999.
Schroll et al., “Applications of Artificial Intelligence for Chemical Inference, III. Aliphatic Ethers Diagnosed by Their Low-Resolution Mass Spectra and Nuclear Magnetic Resonance Data,”Journal of the American Chemical Society,Dec. 17, 1969, pp. 7440-7445.
Crawford et al., “Computer Methods in Analytical Mass Spectrometry; Empirical Identification of Molecular Class,” 6 pages, 1968.
Jurs et al., “Computerized Learning Machines Applied to Chemical Problems; Molecular Formula Determination from Low Resolution Mass Spectrometry,”Analytical Chemistry,vol. 41, No. 1, Jan. 1969, pp. 21-27.
Meuzelaar et al., “A Technique for Fast and Reproducible Fingerprinting of Bacteria by Pyrolysis Mass Spectrometry,”Analytical Chemistry,vol. 45, No. 3, Mar. 1973, pp. 587-590.
“Constraints on “Learning Machine” Classification Methods,”Analytical Chemistry,vol. 48, No. 14, Dec. 1976, pp. 2265-2268, Gray, N.A.B.
Lowry et al., “Comparison of Various K-Nearest Neighbor Voting Schemes with the Self-Training Interpretive and Retrieval System for Identifying Molecular Substructures from Mass Spectral Data,”Analytical Chemistry,vol. 49, No. 12, Oct. 1977, pp. 1720-1722.
Macfie et al., “Use of Canonical Variates Analysis in Differentiation of Bacteria by Pyrolysis Gas-Liquid Chromatography,”Journal of General Microbiology(1978), 104, pp. 67-74, Great Britain.
Atkinson et al., “Statistical Techniques for Diagnosing CIN Using Fluorescence Spectroscopy: SVD and CART,”Journal of Cellular Biochemistry,Supplement 23, pp. 125-130 (1995).
Dzeroski et al., “Diterpene Structure Elucidation from13C NMR-Spectra with Machine Learning,”Intelligent Data Analysis in Medicine and Pharmacology,pp. 207-225, Kluwer Academic Publishers, 1997.
Voorhees et al., “Approaches to Pyrolysis/Mass Spectrometry Data Analysis of Biological Materials,”Computer-Enhanced Analytical Spectroscopy,vol. 2, pp. 259-275, Plenum Press, New York, 1990.
Reibnegger et al., “Neural networks as a tool for utilizing laboratory information: Comparison with linear discrminant analysis and with classification and regression trees,”Proc. Natl. Acad. Sci. USA,vol. 88, pp. 11426-11430, Dec. 1991.
Jellum et al., “Mass Spectrometry in Diagnosis of Metabolic Disorders,”Biomedical and Environmental Mass Spectrometry,vol. 16, pp. 57-62 (1988).
Wythoff et al., “Spectral Peak Verification and Recognition Using a Multilayered Neural Network,”Analytic Chemistry,vol. 62, No. 24, pp. 2702-2709, Dec. 15, 1990.
Meyer et al., “Identification of the1H-NMR Spectra of Complex Oligosaccharides with Artificial Neural Networks,”Science,vol. 251, pp. 542-544, Feb. 1991.
Furlong et al., “N
Hitt Ben A.
Levine Peter J.
Liotta Lance A.
Petricoin, III Emanuel F.
Correlogic Systems, Inc.
The United States of America as Represented by the Department of
Zeman Mary K.
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