Process for directly determining apurinic and apyrimidinic sites

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

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435 18, 436 94, C12Q 168, C12Q 134

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048638471

ABSTRACT:
A simple and fast process is described which serves to directly determine apurinic and apyrimidinic sites (AP sites) in DNA using [.sup.14 C]methoxyamine which, after loss of a purine or pyrimidine base, respectively, reacts with the resultant aldehyde groups of the deoxyribose groups.
The incorporation of the [.sup.14 C]methoxyamine in DNA is proportional to the number of AP sites. Since methoxyamine does not cause the DNA to degrade, the unreacted AP sites can be measured in order to determine the radioactivity of the acid-insoluble fraction.
The process lends itself to the analysis of DNA-damages such as those which are physically or chemically produced. Moreover it is suitable to demonstrate and determine the activity of DNA glycosylases, in particular of uracil-DNA glycosylases.

REFERENCES:
Coombs et al, Biochim. Biophys. Acta, 174: 161-173 (1969).
Talpaert-Borle et al, Biochim. Biophys. Acta, 740: 410-416 (Sep. 9, 1983).
Talpaert-Borle et al, J. Biol. Chem., 257(3): 1208-1214 (1982).
Talpaert-Borle et al, J. Biol. Chem., 254(14): 6387-6391 (1979).
J. of Virology, 40(1): 204-210 (1981), H. Warner et al., "Evidence that the UV Endonuclease Activity Induced by Bacteriophage T4 Contains Both Pyrimidine Dimer DNA, Glycosylase and Apyrimidinic/Apurinic Endonuclease Activities in the Enzyme Molecule".
Proc. Natl. Acad. Sci. USA., 78(5): 2742-2746 (1981), Y. Nakabeppu et al., "Physical Association of Pyrimidine Dimer DNA Glycosylase and Apurinic/Apyrimidinic DNA".

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