Probe composition containing a binding domain and polymer chain

Organic compounds -- part of the class 532-570 series – Organic compounds – Carbohydrates or derivatives

Patent

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

536 2433, 435 6, 435 912, C07H 2104

Patent

active

057770964

ABSTRACT:
Method and composition for detecting one or more selected polynucleotide regions in a target polynucleotide. In one embodiment of the invention, a plurality of different-sequence probe pairs are added to a target polynucleotide, where each probe pair includes two polynucleotide probe elements which are complementary in sequence to adjacent portions of a selected one of the target sequences in the target polynucleotide. In each probe pair, one of the probe elements contains a non-polynucleotide polymer chain which imparts a distinctive mobility to the associated probe pair, when the elements in the pair are ligated. The other element in the pair contains a detectable reporter label. After the probe pairs have been allowed to hybridize with the target polynucleotide, the hybridized polynucleotides are treated under conditions effective to ligate the end subunits of target-bound probe elements when their end subunits are base-paired with adjacent target bases. The ligated probe pairs are then released from the target polynucleotide and separated electrophoretically in a sieving matrix, or chromatographically.

REFERENCES:
patent: 4683202 (1987-07-01), Mullis
patent: 4879214 (1989-11-01), Kornher et al.
patent: 4883750 (1989-11-01), Whiteley et al.
patent: 4925785 (1990-05-01), Wang et al.
patent: 5011769 (1991-04-01), Duck et al.
patent: 5061361 (1991-10-01), Gordon
patent: 5093232 (1992-03-01), Urdea et al.
patent: 5108568 (1992-04-01), Van Alstine
patent: 5171534 (1992-12-01), Smith et al.
patent: 5470705 (1995-11-01), Grossman et al.
patent: 5514543 (1996-05-01), Grossman et al.
patent: 5580732 (1996-12-01), Grossman et al.
Agrawal, S., and Tang, J.-Y., "Site-Specific Functionalization of Oligodeoxynucleotides for Non-Radioactive Labelling," Tetrahedron Lett. 31(11):1543-1546 (1990).
Barany, F., "Genetic Disease Detection and DNA Amplification Using Cloned Thermostable Ligase," PNAS USA 88:189-193 (1991).
Chen, et al., "Low-Cost, High-Sensitivity Laser-Induced Fluorescence Detection for DNA Sequencing by Capillary Gel Electrophoresis," J. Chromatography 559:237-246 (1991).
Cload, S.T., and Schepartz, A., "Polyether Tethered Oligonucleotide Probes," J. Am. Chem. Soc. 113:6324 (1991).
Cohen, A.S., et al., "High-Performance Capillary Electrophoretic Separation of Bases, Nucleosides, and Oligonucleotides: Retention Manipulation via Micellar Solutions and Metal Additives," Anal. Chem. 59(7):1021-1027 (1987).
Cohen, et al., "Rapid Seperation and Purification of Oligonucleotides by High-Performance Capillary Gel Electrophoresis," PNAS 85:9660-9663 (1988).
Connell, C., et al., "Automated DNA Sequence Analysis," BioTechniques 5(4):342-348 (1987).
Cunico, R.L., et al., "Characterization of Polyethylene Glycol Modified Proteins Using Charge Reversed Capillary Electrophoresis," J. Chromatog. 559:467-477 (1991).
Duck, P., et al., "Probe Amplifier System Based on Chimeric Cycling Oligonucleotides," BioTechniques 9(2):152-147 (1990).
Haralambidis, J., et al., "The Synthesis of Polyamide-Oligonucleotide Conjugate Molecules," Nuc. Acids Res. 18(3):493-499 (1990).
Jorgenson, J.W., and Lukacs, K.D., "Capillary Zone Electrophoresis," Science 222:266-172 (1983).
Kambara, et al., "Real Time Automated Simultaneous Double-Stranded DNA Sequencing Using Two-Color Fluorophore Labeling," BioTechnology 9:648-651 (1991).
Karger, et al., "Multiwavelength Fluorescence Detection for DNA Sequencing Using Capillary Electrophoresis," Nuc. Acids Res. 19(18):4955-4962 (1991).
Kronher, J.S., and Livak, K.J., "Mutation Detecting Using Nucleotide Analogs that Alter Electrophoretic Mobility," Nuc. Acids Res. 17(19):7779-7784 (1989).
Landegren, U., et al., "A Ligase-Mediated Gene Detection Technique," Science 241:1077-1080 (1988).
Livak, K.J., et al., "Detection of Single Base Differences Using Biotinylated Nucleotides with Very Long Linker Arms," Nuc. Acids Res. 20(18):4831-4837 (1992).
Mayer, P., et al., "Theory of DNA Sequencing Using Free Solution Electrophoresis of Protein-DNA Complexes," Analytical Chem. 66:1777-1780 (1994).
Muller, W., et al., "Polyethylene Glycol Derivatives of Base and Sequence Specific DNA Ligands: DNA Interaction and Application for Base-Specific Seperation of DNA Fragments by Gel Electrophoresis," Nuc. Acids Res. 9(1):95-119 (1981).
Nathakarkitkool, S., et al., "High-Resolution Capillary Electrophoretic Analysis of DNA in Free Solution," Electrophoresis 13:18-31 (1992).
Noolandi, J., "A New Concept for Sequencing DNA by Capillary Electrophoresis," Electrophoresis 13:394-395 (1992).
Prober, J.M., et al., "A System for Rapid DNA Sequencing with Fluorescent Chain-Terminating Dideoxynucleotides," Science 238:336-341 (1987).
Righetti, P.G., "Recent Developments in Electrophoretic Methods," J. Chromatog. 516:3-22 (1990).
Saiki, R.K., et al., "Enzymatic Amplification of .beta.-Globin Genomic Sequences and Restriction Site Analysis for Diagnosis of Sickle-Cell Anemia," Science 230:1350-1354 (1985).
Skolnick, M.H., and Wallace, R.B., "Simultaneous Analysis of Multiple Polymorphic Loci Using Amplified Sequence Polymorphisms (ASPs)," Genomics 2:273-279 (1988).
Winn-Deen, E.S., and Iovannisci, D.M., "Sensitive Fluorescence Method for Detecting DNA Ligation Amplification Products," Clin. Chem. 37(9):1522-1523 (1991).
Wu, D.Y., and Wallace, R.B., "The Ligation Amplification Reaction (LAR) --Amplification of Specific DNA Sequences using Sequential Rounds of Template-Dependent Ligation," Genomics 4:560-569 (1989).
Wu, D.Y., and Wallace, R.B., "Specificity of the Nick-Closing Activity of Bacteriophage T4 DNA Ligase," Gene 76:245-254 (1989).
"Optimization and Troubleshooting DNA Sequencing with the Model 370A for Use with Version 1.20 Data Analysis Software," Applied Biosystems User Bulletin 7:1-15 (Apr. 15, 1988).

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Probe composition containing a binding domain and polymer chain does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Probe composition containing a binding domain and polymer chain , we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Probe composition containing a binding domain and polymer chain will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-1207314

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.