Polynucleotides for use as tags and tag complements,...

Details Polynucleotides for use as tags and tag complements,... Polynucleotides for use as tags and tag complements,...

2009-10-09

2010-12-07

Martinell, James (Department: 1634)

Chemistry: molecular biology and microbiology

Measuring or testing process involving enzymes or...

Involving nucleic acid

C536S023100

Reexamination Certificate

active

07846670

ABSTRACT:
A family of minimally cross-hybridizing nucleotide sequences, methods of use, etc. A specific family of 210 24mers is described.

REFERENCES:
patent: 4851331 (1989-07-01), Vary et al.
patent: 4942124 (1990-07-01), Church
patent: 5002867 (1991-03-01), Macevicz
patent: 5149625 (1992-09-01), Church et al.
patent: 5391480 (1995-02-01), Davis et al.
patent: 5604097 (1997-02-01), Brenner
patent: 5635400 (1997-06-01), Brenner et al.
patent: 5654413 (1997-08-01), Brenner et al.
patent: 5830539 (1998-11-01), Yan et al.
patent: 5846719 (1998-12-01), Brenner et al.
patent: 5863722 (1999-01-01), Brenner
patent: 5981176 (1999-11-01), Wallace
patent: 6013445 (2000-01-01), Albrecht et al.
patent: 6040138 (2000-03-01), Lockhart et al.
patent: 6103463 (2000-08-01), Chetverin et al.
patent: 6150095 (2000-11-01), Southern et al.
patent: 6150516 (2000-11-01), Brenner et al.
patent: 6205444 (2001-03-01), Floratos et al.
patent: 6287778 (2001-09-01), Huang et al.
patent: 6322971 (2001-11-01), Chetverin et al.
patent: 6458530 (2002-10-01), Morris et al.
patent: 6472157 (2002-10-01), Di Rienzo et al.
patent: 7157564 (2007-01-01), Mittmann et al.
patent: 7226737 (2007-06-01), Pancoska et al.
patent: 7608398 (2009-10-01), Pancoska et al.
patent: 7645868 (2010-01-01), Kobler et al.
patent: 2002/0177141 (2002-11-01), Chee et al.
patent: 2005/0089851 (2005-04-01), Pancoska et al.
patent: 2005/0191625 (2005-09-01), Kobler et al.
patent: 2007/0244310 (2007-10-01), Pancoska et al.
patent: 2008/0014587 (2008-01-01), Pancoska et al.
patent: 2010/0112705 (2010-05-01), Pancoska et al.
patent: 0698792 (1996-02-01), None
patent: 0799897 (1997-10-01), None
patent: WO-93/17126 (1993-09-01), None
patent: WO-97/31256 (1997-08-01), None
patent: WO-00/58516 (2000-10-01), None
patent: WO-01/59151 (2001-08-01), None
patent: WO-02/053728 (2002-07-01), None
patent: WO-02/059354 (2002-08-01), None
patent: WO-02/059355 (2002-08-01), None
Niemeyer, et al., (1999) “DNA-directed immobilization: Efficient, reversible, and site-selective surface binding of proteins by means of covalent DNA-streptavidin conjugates,” Analytical Biochemistry, 268(1):54-63.
Southern, et al., (1999) “Molecular Interactions on Microarrays,” Nature Genetics, 21:5-9.
Breslauer, et al., (1986) “Predicting DNA duplex stability from the base sequence,” Proc. Natl. Acad. Sci. USA, 83:3746-3750.
Caruthers, et al., (1987) “Chemical Synthesis of Deoxyoligonucleotides by the Phosphoramidite Method,” Methods in Enzymology 54:287-313.
Church, et al., (1988) “Multiplex DNA Sequencing,” Science, 240:185-188.
Kwoh. et al., (1989) “Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format,” Proc. Natl. Acad. Sci. USA, 86:1173-1177.
Rychlik, et al., (1989) “A computer program for choosing optimal oligonucleotides for filter hybridization, sequencing and in vitro amplification of DNA,” Nucleic Acids Research, 17(21): 8543-8551.
Fodor, et al., (1991) “Light-directed, Spatially Addressable Parallel Chemical Synthesis,” Science, 251:767-773.
Needels, et al., (1993) “Generation and screening of an oligonucleotide-encoded synthetic peptide library,” Proc. Natl. Acad. Sci. USA, 90:10700-10704.
Ausubel, et al., (1993) “Short Protocols in Molecular Biology,” 15-16 through 15-21.
Alper J., (1994) “Drug Discovery on the Assembly Line,” Science, 264:1399-1401.
Nikiforov, et al., (1994),“Genetic Bit Analysis: a solid phase method for typing single nucleotide polymorphisms,” Nucleic Acids Research, 22(20):4167-4175.
Southern, et al., (1994) “Arrays of complementary oligonucleotide for analyzing the hybridisation behaviour of nucleic acids,” Nucleic Acids Research, 22(8):1368-1373.
Hensel, et al., (1995) “Simultaneous Identification of Bacterial Virulence Genes by Negative Selection,” Science, 269:400-403.
Lyttle, et al., (1995) “Mutagenesis Using Trinucleotide β-Cyanoethyl Phosphoramidites,” Bio Techniques, 19(2):274-280.
Matson, et al., (1995) “Biopolymer Synthesis on Polypropylene Supports: Oligonucleotide Arrays,” Analytical Biochemistry, 224:110-116.
Shoemaker, et al., (1996) “Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy,” Nature Genetics,14:450-456.
Hermanson, et al., (1996) “Bioconjugate Techniques,” Academic Press, pp. 640-671.
Head, et al., (1997) “Nested genetic bit analysis (N-GBA) for mutation detection in the p53 tumor suppressor gene,” Nucleic Acids Research, 25(24):5065-5071.
Weiler, et al., (1997) “Hybridisation based DNA screening on peptide nucleic acid (PNA) oligomer arrays,” Nucleic Acids Research, 25(14):2792-2799.
Proudnikov, et al., (1998) “Immobilization of DNA in Polyacrylamide Gel for the Manufacture of DNA and DNA-Oligonucleotide Microchips,” Analytical Biochemistry, 259:34-41.
Robertson, et al., (1998) “An Introduction to PCR Primer Design and Optimization of Amplification Reactions”, Methods in Molecular Biology, 98:121-154.
Peyret, et al., (1999) “Nearest-Neighbor Thermodynamics and NMR of DNA Sequences with Internal A•A, C•C, G•G, and T•T Mismatches,” Biochemistry, 38:3468-3477.
Lipshutz, et al., (1999) “High density synthetic oligonucleotide arrays”, Nature Genetics Supplement, 21:20-24.
Hacia, et al., (1999) “Design of modified oligodeoxyribonucleotide probes to detect telomere repeat sequences in Fish assays,” Nucleic Acids Research, 27(20):4034-4039.
Nguyen, et al., (1999) “Smoothing of the thermal stability of DNA duplexes by using modified nucleosides and chaotropic agents,” Nucleic Acids Research, 27(6):1492-1498.
Iannone, et al., (2000) “Multiplexed Single Nucleotide Polymorphism Genotyping by Oligonucleotide Ligation and Flow Cytometry”, Cytometry, 39:131-140.
Kane, et al., (2000) “Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays,” Nucleic Acids Research, 28(22):4552-4557.
Zammatteo, et al., (2000) “Comparison between different strategies of covalent attachment of DNA to glass surfaces to build DNA microarrays,”Analytical Biochemistry, 280:143-150.
Brenner, et al., (1992) “Encoded combinatorial chemistry,” Proc. Natl. Acad. Sci. USA, 89:5381-5383.
Brenner, et al., (2000) “In vitro cloning of complex mixtures of DNA on microbeads: Physical separation of differentially expressed cDNAs,” PNAS,97:1665-1670.
Brenner, et al., (2000) “Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays,” Nature Biotech.,18:630-634.
Chetverin, et al., (1994) “Oligonucleotide Arrays: New Concepts and Possibilities,” Bio/Technology, 12:1093-1099.
Frutos, et al., (1997) “Demonstration of a word design strategy for DNA computing on surfaces,” NAR, 25(23):4748-4757.
Matthews, et al., (1988) “Analytical Strategies for the Use of DNA Probes,” Analytical Biochemistry, 169:1-25.
Morgan, et al., (1994) “Simple and Efficient cDNA Capture Utilising a Short Gene-Specific Probe attached to Magnetic Beads,” Biochem. Soc. Trans., 22:453S.
Ohleymer, et al., (1993) “Complex Synthetic Chemical Libraries Indexed with Molecular Tags,” PNAS, 90:10922-10926.
Sasaki , et al., (1994) “Construction of a Normalized cDNA Library by Introduction of a Semi-Solid mRNA-cDNA Hybridization System,” NAR, 22:987-992.
Ben-Dor, et al., (2000) “Universal DNA Tag Systems: A Combinatorial Design Scheme,” J. Comput. Biol.,7(3-4):503-519.
Kececioglu, et al., (1995) “Combinatorial algorithms for DNA sequence assembly,” Algorithmica, 13:7-51 (enclosed as p1-45).
Michael, et al., (1998) “R

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