Polymerase enhancing factor (PEF) extracts, PEF protein...

Chemistry: molecular biology and microbiology – Micro-organism – tissue cell culture or enzyme using process... – Preparing compound containing saccharide radical

Reexamination Certificate

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Reexamination Certificate

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07625725

ABSTRACT:
The invention provides novel extracts, proteins, and complexes that improve the polymerization activity of nucleic acid polymerases. Included within the aspects of the invention are methods for identifying compositions with a polymerase enhancing activity, methods for purifying and using these compositions, and specific extracts, proteins, and complexes that function to enhance polymerase activity. As an example, specifically described is nucleotide and amino acid sequence information forPyrococcus furioususPEF (P45), which was used to produce a recombinant PEF.

REFERENCES:
patent: 4376110 (1983-03-01), David et al.
patent: 4683202 (1987-07-01), Mullis
patent: 4795699 (1989-01-01), Tabor et al.
patent: 4873192 (1989-10-01), Kunkel
patent: 4921794 (1990-05-01), Tabor et al.
patent: 4946786 (1990-08-01), Tabor et al.
patent: 5001050 (1991-03-01), Blanco et al.
patent: 5073632 (1991-12-01), Donovan et al.
patent: 5075216 (1991-12-01), Innis et al.
patent: 5079352 (1992-01-01), Gelfand et al.
patent: 5210036 (1993-05-01), Comb et al.
patent: 5262529 (1993-11-01), Dryja et al.
patent: 5310652 (1994-05-01), Gelfand et al.
patent: 5322785 (1994-06-01), Comb et al.
patent: 5352778 (1994-10-01), Comb et al.
patent: 5352785 (1994-10-01), Herzberg et al.
patent: 5374553 (1994-12-01), Gelfand et al.
patent: 5407800 (1995-04-01), Gelfand et al.
patent: 5422239 (1995-06-01), Wands et al.
patent: 5427928 (1995-06-01), Slesarev
patent: 5436149 (1995-07-01), Barnes
patent: 5449603 (1995-09-01), Nielson et al.
patent: 5466591 (1995-11-01), Abramson et al.
patent: 5474796 (1995-12-01), Brennan
patent: 5489523 (1996-02-01), Mathur
patent: 5500363 (1996-03-01), Comb et al.
patent: 5512462 (1996-04-01), Cheng
patent: 5534407 (1996-07-01), Tabor et al.
patent: 5545552 (1996-08-01), Mathur
patent: 5556772 (1996-09-01), Sorge et al.
patent: 5605824 (1997-02-01), Nielson et al.
patent: 5618702 (1997-04-01), Scanlon
patent: 6183997 (2001-02-01), Hogrefe
patent: 6333165 (2001-12-01), Hogrefe
patent: 6379553 (2002-04-01), Hogrefe
patent: 6410277 (2002-06-01), Barnes
patent: 6444428 (2002-09-01), Hogrefe
patent: 0 265 293 (1988-04-01), None
patent: 0 386 857 (1990-09-01), None
patent: 0 416 755 (1991-03-01), None
patent: 0 502 589 (1992-09-01), None
patent: 0 669 401 (1995-08-01), None
patent: 0 669 401 (1995-08-01), None
patent: 0 870 832 (1998-10-01), None
patent: 0 997 530 (2000-05-01), None
patent: WO 89/06691 (1989-07-01), None
patent: WO 91/02090 (1991-02-01), None
patent: WO 92/06188 (1992-04-01), None
patent: WO 92/06200 (1992-04-01), None
patent: WO 92/09689 (1992-06-01), None
patent: WO 94/26766 A (1994-11-01), None
patent: WO 97/37038 (1997-10-01), None
patent: WO 98/42860 (1998-10-01), None
patent: WO 99/00506 (1999-01-01), None
patent: WO 01/09347 (2001-02-01), None
patent: WO 01/09347 (2001-02-01), None
patent: WO 01/16333 (2001-03-01), None
Lasken et al., “Archaebacterial DNA Polymerases Tightly Bind Uracil-containing DNA”, Journal of Biological Chemistry, vol. 271, No. 30, pp. 17692-17696 (1996).
Barnes, “PCR amplification of up to 35-kb DNA with high fidelity and high yield from λ bacteriophage templates”, Proc. Natl. Acad. Sci., vol. 91,pp. 2216-2220 (1994).
T.A. Brown, Molecular Biology LabFax. Biosis Scientific Publishers, Blackwell Scientific Publications, Madison, WI, pp. 140-153, Dec. 1991.
Hogrefeet al. “Archael dUTPase enhances PCR amplifications with archeal DNA polymerases by preventing dUTP incorporation.”Proc. Natl. Acad. Sci. USA, 99(2):596-601 (2002).
Lasken et al., “Archaebacterial DNA Polymerases Tightly Bind Uracil-containing DNA,”The Journal of Biological Chemistry, 271(30):17692-17696 (1996).
Slupphaug et al., “Low Incorporation of dUMP by Some Thermostable DNA Polymerase May Limit Their Use in PCR Amplifications.”Analytical Biochemistry, 211:164-169 (1993).
Wang et al., “dcd(dCTP Deaminase) Gene ofEscherichia coil: Mapping, Cloning, Sequencing, and Identification as a Locus of Supressors of Lethaldut(dUTPase) Mutations,”Journal of Bacteriology, 174(17):5647-5653 (1992).
E.M.B.L. Database Accession No. Q02103 (1993).
E.M.B.L. Database Accession No. P44953 (1995).
Supplementary European Search Report, for corresponding EP 98911883, mailed Nov. 6, 2002.
Udy et al., “Microplate DNA Preparation, PCR Screening and Cell Freezing for Gene Targeting in Embryonic Stem Cells,”BioTechniques, 17(5):887-894 (1994).
Office Action mailed Mar. 2, 1999, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Amendment and Response to Mar. 2, 1999. Office Action filed Sep. 2, 1999, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Office Action mailed Nov. 23, 1999, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Response Under 37 C.F.R. § 1.116 filed Aug. 16, 2000, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Advisory Action mailed Mar. 1, 2001, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Office Action mailed Feb. 27, 2002, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Amendment filed Jul. 29, 2002, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Office Action mailed Oct. 8, 2002, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Amendment filed Mar. 10, 2003, in U.S. Patent Application No. 08/957.709, filed Oct. 24. 1997.
Office Action mailed May 6, 2003, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Amendment After Final filed Nov. 7, 2003, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Advisory Action mailed Apr. 20, 2004, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Amendment filed Sep. 13, 2004, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Office Action mailed Nov. 18, 2004, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Amendment filed May 18, 2005, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Office Action mailed Aug. 9, 2005, in U.S. Appl. No. 08/957,709, filed Oct. 24, 1997.
Office Action mailed Mar. 25, 2003, in U.S. Appl. No. 09/631,614, filed Aug. 4, 2000.
Amendment filed Aug. 25, 2003, in U.S. Appl. No. 09/631,614, filed Aug. 4. 2000.
Amendment (replacement) dated Nov. 3, 2003, in U.S. Appl. No. 09/631,614, filed Aug. 4, 2000.
Office Action mailed Dec. 29, 2003, in U.S. Appl. No. 09/631.614, filed Aug. 4, 2000.
Amendment After Final filed Apr. 29. 2004, in U.S. Appl. No. 09/631.614, filed Aug. 4, 2000.
Advisory Action mailed May 27. 2004, in U.S. Appl. No. 09/631,614, filed Aug. 4, 2000.
Office Action mailed Jul. 21, 2004, in U.S. Appl. No. 09/631,614, filed Aug. 4, 2000.
Amendment filed Jan. 21, 2005. In U.S. Appl. No. 09/631.614, filed Aug. 4, 2000.
Office Action mailed Apr. 20, 2005, in U.S. Appl. No. 09/631,614, filed Aug. 4. 2000.
Albrecht et al., Swiss-Prot accession No. Q01034, Apr. 1, 1993.
Anonymous, “Recombinant VentR198 DNA Polymerase,”The Neb Transcript, vol. 3, No. 1, p. 4 (1991).
Attachment for 20XSSC—cDNA Hybridization protocol using GeneTac Hybridization Unit.
Baker et al., “Polymerases and the replisome: machines within machines,”Cell, 92:295-305, 1998.
Barnes, “The fidelity ofTaqpolymerase catalyzing PCR is improved by an N-terminal deletion,”Gene, 112: 29-35 (1992).
Bork, “Powers and Pitfalls in Sequence Analysis: The 70% Hurdle,”Genome Research, 10:398-400 (2000).
Branden et al.,Introduction to Protein Structure, Garland Publishing Inc., New York, p. 247 (1991).
Broun et al., “Catalytic Plasticity of Fatty Acid Modification Enzymes Underlying Chemical Diversity of Plant Upids,”Science, 282:1315-1317 (1998).
Bult et al., PIR accession No. D64437, Sep. 13, 1996.
Bult et al., PIR 68 accession No. F64353, Sep. 16, 1996.
Cheng et al., “Effective amplification of long targets from cloned inserts and human genomic DNA,”Proc. Natl. Acad. Sci. USA, 91:5695-5699 (1994).
Clark et al. “Novel blunt-end addition reactions catalyzed by DNA Polymerase I ofEscherichia coli,” J. Mol. Biol., 198:123-127 (1987).
Clark, “Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryo

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