Chemistry: molecular biology and microbiology – Micro-organism – tissue cell culture or enzyme using process... – Preparing oxygen-containing organic compound
Reexamination Certificate
1999-11-15
2001-05-08
Nutter, Nathan M. (Department: 1711)
Chemistry: molecular biology and microbiology
Micro-organism, tissue cell culture or enzyme using process...
Preparing oxygen-containing organic compound
C435S155000, C435S157000, C435S158000, C528S001000, C530S200000
Reexamination Certificate
active
06228623
ABSTRACT:
FIELD OF INVENTION
The present invention relates to genetically engineered plants and bacteria. In particular, it relates to methods for optimizing substrate pools to facilitate the biosynthetic production of commercially useful levels of polyhydroxyalkanoates (PHAs) in bacteria and plants.
BACKGROUND OF INVENTION
PHAs are bacterial polyesters that accumulate in a wide variety of bacteria. These polymers have properties ranging from stiff and brittle plastics to rubber-like materials, and are biodegradable. Because of these properties, PHAs are an attractive source of nonpolluting plastics and elastomers.
The present invention especially relates to the production of copolyesters of &bgr;-hydroxybutyrate (3HB) and &bgr;-hydroxyvalerate (3HV), designated P(3HB-co-3HV) copolymer, and derivatives thereof.
Currently, there are approximately a dozen biodegradable plastics in commercial use that possess properties suitable for producing a number of specialty and commodity products (Lindsay, 1992). One such biodegradable plastic in the polyhydroxyalkanoate (PHA) family that is commercially important is Biopol™, a random copolymer of 3-hydroxybutyrate (3HB) and 3-hydroxyvalerate (3HV). This bioplastic is used to produce biodegradable molded material (e.g., bottles), films, coatings, and in drug release applications. Biopol™ is produced via a fermentation process employing the bacterium
Alcaigenes eutrophus
(Byrom, 1987). The current market price is $6-7/lb, and the annual production is 1,000 tons. By best estimates, this price can be reduced only about 2-fold via fermentation (Poirier et al., 1995). Competitive synthetic plastics such as polypropylene and polyethylene cost about 35-45¢/lb (Layman, 1994). The annual global demand for polyethylene alone is about 37 million metric tons (Poirier et al., 1995). It is therefore likely that the cost of producing P(3HB-co-3HV) by microbial fermentation will restrict its use to low-volume specialty applications.
Nakamura et al. (1992) reported using threonine (20 g/L) as the sole carbon source for the production of P(3HB-co-3HV) copolymer in
A. eutrophus
. These workers initially suggested that the copolymer might form via the degradation of threonine by threonine deaminase, with conversion of the resultant &agr;-ketobutyrate to propionyl-CoA. However, they ultimately concluded that threonine was utilized directly, without breaking carbon-carbon bonds, to form valeryl-CoA as the 3HV precursor. The nature of this chemical conversion was not described, but since the breaking of carbon-carbon bonds was not postulated to occur, the pathway could not involve threonine deaminase in conjunction with an &agr;-ketoacid decarboxylating step to form propionate or propionyl-CoA. In the experiments of Nakamura et al, the PHA polymer content was very low (<6% of dry cell weight). This result, in conjunction with the expense of feeding bacteria threonine, makes their approach impractical for the commercial production of P(3HB-co3HV) copolymer.
Yoon et al. (1995) have shown that growth of Alcaligenes sp. SH-69 on a medium supplemented with threonine, isoleucine, or valine resulted in significant increases in the 3HV fraction of the P(3HB-co-3HV) copolymer. In addition to these amino acids, glucose (3% wt/vol) was also added to the growth media. In contrast to the results obtained by Nakamura et al. (1992), growth of
A. eutrophus
under the conditions described by Yoon et al. (1995) did not result in the production of P(3HB-co-3HV) copolymer when the medium was supplemented with threonine as the sole carbon source. From their results, Yoon et al. (1995) implied that the synthetic pathway for the 3HV component in P(3HB-co-3HV) copolymer is likely the same as that described in WO 91/18995 and Steinbüchel and Pieper (1992). This postulated synthetic pathway involves the degradation of isoleucine to propionyl-CoA (FIG.
3
).
U.S. Pat. No. 5,602,321 teaches the insertion and expression of polymer biosynthesis genes in plants, and preferably in cotton. Genetic constructs encoding ketothiolase, acetoacetyl CoA reductase, and PHB synthase enzymes were introduced into cotton.
Sim et al. (1997) reported that the amount of polyhydroxyalkanoate synthase protein in a bacterial cell affected the molecular weight and polydispersity of polymers produced therein. Increased synthase concentrations led to the biosynthesis of lower molecular weight polymer.
John and Keller (1996) obtained polyhydroxybutyrate from cotton transformed with the phaB and phaC genes from
Alcaligenes eutrophus.
A major fraction of the polymer obtained had a molecular weight in excess of 600,000. Polydispersity of the polymer is not discussed, nor is sufficient data presented to allow calculation thereof.
Poirier et al. (1995b) described the biosynthesis of polyhydroxybutyrate in a suspension culture of Arabidopsis thaliana plant cells expressing the phbB and phbC genes from
Alcaligenes eutrophus.
No C3 or C5 3-hydroxyacids were detected by gas chromatography of plant extracts. The polyhydroxybutyrate was found to have a broad molecular weight distribution of 10.5. Unlike bacterially produced polymer, the plant cell produced material displayed a polymodal distribution, comprising at least three distinct subpopulations of molecular weight ranges.
The PHB Biosynthetic Pathway
Polyhydroxybutyrate (PHB) was first discovered in 1926 as a constituent of the bacterium
Bacillus megaterium
(Lemoigne, 1926). Since then, PHAs such as PHB have been found in more than 90 different genera of gram-negative and gram-positive bacteria (Steinbüchel, 1991). These microorganisms produce PHAs using R-&bgr;-hydroxyacyl-CoAs as the direct metabolic substrate for a PHA synthase, and produce polymers of R-(3)-bydroxyalkanoates having chain lengths ranging from C3-C14 (Steinbüchel and Valentin, 1995).
To date, the best understood biochemical pathway for PHB production is that found in the bacterium
Alcaligenes eutrophus
(Dawes and Senior, 1973; Slater et al., 1988; Schubert et al., 1988; Peoples and Sinskey, 1989a and 1989b). This pathway, which is also utilized by other microorganisms, is summarized in FIG.
1
. In this organism, an operon encoding three gene products, i.e., PHB synthase, &bgr;-ketothiolase, and acetoacetyl-CoA reductase, encoded by the phbC, phbA, and phbB genes, respectively, are required to produce the PHA homopolymer R-polyhydroxybutyrate (PHB).
As further shown in
FIG. 1
, acetyl-CoA is the starting substrate employed in the biosynthetic pathway. This metabolite is naturally available for PHB production in plants and bacteria when these organisms are genetically manipulated to produce the PHB polyester.
Recently, a multi-enzyme pathway was successfully introduced into plants for the generation of polyhydroxybutyrate (PHB) (Poirier et al., 1992).
The P(3HB-co-3HV) Copolymer Biosynthetic Pathway
As noted above, P(3HB-co-3HV) random copolymer, commercially known as Biopol™, is produced by fermentation employing
A. eutrophus.
A proposed biosynthetic pathway for P(3HB-co-3HV) copolymer production is shown in FIG.
2
. Production of this polymer in plants has not yet been demonstrated.
The successful production of P(3HB-co-3HV) copolymer in plants or bacteria requires the generation of substrates that can be utilized by the PHA biosynthetic enzymes. For the 3HB component of the polymer, the substrate naturally exists in plants in sufficient concentration in the form of acetyl-CoA (Nawrath et al., 1994). This is not true for the 3HV component of the copolymer, however. In this case, the starting substrate is propionyl-CoA. The presence of sufficient pools of acetyl-CoA and propionyl-CoA in plants and microorganisms, along with the proper PHA biosynthetic enzymes (i.e., a &bgr;-ketothiolase, a &bgr;-ketoacyl-CoA reductase, and a PHA synthase), would make it possible to produce copolyesters of P(3HB-co-3HV) in these organisms.
The present invention provides a variety of different methods for optimizing levels of substrates employed in the biosynthesis of copolymers of 3-hydroxybutyrate (3HB) a
Asrar Jawed
Mitsky Timothy A.
Shah Devang T.
Beusen Jon
Howrey Simon Arnold & White , LLP
Monsanto Company
Nutter Nathan M.
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