Chemistry: molecular biology and microbiology – Micro-organism – per se ; compositions thereof; proces of... – Bacteria or actinomycetales; media therefor
Reexamination Certificate
2001-03-13
2004-11-30
Kerr, Kathleen (Department: 1652)
Chemistry: molecular biology and microbiology
Micro-organism, per se ; compositions thereof; proces of...
Bacteria or actinomycetales; media therefor
C435S320100, C536S023100, C536S023700
Reexamination Certificate
active
06825030
ABSTRACT:
The invention provides nucleotide sequences from coryneform bacteria which code for the citA gene and a process for the fermentative preparation of amino acids, in particular L-lysine, by attenuation of the citA gene. The citA gene codes for the sensor kinase Cit A of a two-component system.
BACKGROUND
L-Amino acids, in particular L-lysine, are used in human medicine and in the pharmaceuticals industry, in the foodstuffs industry and very particularly in animal nutrition.
It is known that amino acids are prepared by fermentation from strains of coryneform bacteria, in particular
Corynebacterium glutamicum
. Because of their great importance, work is constantly being undertaken to improve the preparation processes. Improvements to the process can relate to fermentation measures, such as, for example, stirring and supply of oxygen, or the composition of the nutrient media, such as, for example, the sugar concentration during the fermentation, or the working up to the product form by, for example, ion exchange chromatography, or the intrinsic output properties of the microorganism itself.
Methods of mutagenesis, selection and mutant selection are used to improve the output properties of these microorganisms. Strains which are resistant to antimetabolites or are auxotrophic for metabolites of regulatory importance and which produce amino acids are obtained in this manner.
Methods of the recombinant DNA technique have also been employed for some years for improving the strain of
Corynebacterium
strains which produce L-amino acids.
OBJECT OF THE INVENTION
The inventors had the object of providing new measures for improved fermentative preparation of amino acids, in particular L-lysine.
BRIEF DESCRIPTION OF THE INVENTION
If L-lysine or lysine are mentioned in the following, this also means the salts, such as e.g., lysine monohydrochloride or lysine sulfate.
The invention provides an isolated polynucleotide from coryneform bacteria, comprising a polynucleotide sequence which codes for the citA gene chosen from the group consisting of
a) polynucleotide which is identical to the extent of at least 70% to a polynucleotide which codes for a polypeptide which comprises the amino acid sequence of SEQ ID No. 2,
b) polynucleotide which codes for a polypeptide which comprises an amino acid sequence which is identical to the extent of at least 70% to the amino acid sequence of SEQ ID No. 2,
c) polynucleotide which is complementary to the polynucleotides of a) or b), and
d) polynucleotide comprising at least 15 successive nucleotides of the polynucleotide sequence of a), b) or c),
the polypeptide preferably having the activity of sensor kinase CitA.
The invention also provides the abovementioned polynucleotide, this preferably being a DNA which is capable of replication, comprising:
(i) the nucleotide sequence shown in SEQ ID No. 1 or
(ii) at least one sequence which corresponds to sequence (i) within the range of the degeneration of the genetic code, or
(iii) at least one sequence which hybridizes with the sequences complementary to sequences (i) or (ii), and optionally
(iv) sense mutations of neutral function in (i).
The invention also provides:
a polynucleotide, in particular DNA, which is capable of replication and comprises the nucleotide sequence as shown in SEQ ID No. 1;
a polynucleotide which codes for a polypeptide which comprises the amino acid sequence as shown in SEQ ID No. 2;
a vector containing parts of the polynucleotide according to the invention, but at least 15 successive nucleotides of the sequence claimed
and coryneform bacteria in which the citA gene is attenuated, in particular by an insertion or deletion.
The invention also provides polynucleotides which substantially comprise a polynucleotide sequence, which are obtainable by screening by means of hybridization of a corresponding gene library of a
coryneform bacterium
, which comprises the complete gene or parts thereof, with a probe which comprises the sequence of the polynucleotide according to the invention or a fragment thereof, and isolation of the polynucleotide sequence mentioned.
Polynucleotides comprising the sequences according to the invention are suitable as hybridization probes for RNA, CDNA and DNA, in order to isolate, in the full length, nucleic acids or polynucleotides or genes which code for CitA protein or to isolate those nucleic acids or polynucleotides or genes which have a high similarity with the sequence of the citA gene.
Polynucleotides comprising the sequences according to the invention are furthermore suitable as primers with the aid of which DNA of genes which code for the CitA protein can be prepared by the polymerase chain reaction (PCR).
Such oligonucleotides which serve as probes or primers comprise at least 30, preferably at least 20, very particularly preferably at least 15 successive nucleotides. Oligonucleotides which have a length of at least 40 or 50 nucleotides are also suitable.
REFERENCES:
patent: 2002/0197605 (2002-12-01), Nakagawa et al.
patent: 10128510 (2002-12-01), None
patent: 1 094 111 (2001-04-01), None
patent: 1 096 013 (2001-05-01), None
patent: 1 106 693 (2001-06-01), None
patent: 1108790 (2001-06-01), None
patent: WO 01/00842 (2001-01-01), None
patent: WO 02/18427 (2002-03-01), None
Mizuki et al. GenBank Accession No. D84394. Homo sapiens genomic DNA, 237 kb segment from 6p21.3 region including HLA genes, complete sequence. Published Sep. 11, 1997.*
GenBank Accession No. AP005274.Corynebacterium glutamicumACC 13032 DNA, complete genome, section 1/10. Created Jun. 5, 2002.*
GenBank Accession No. U31464.Klebsiella pneumoniaecitrate fermentation regulatory genes: sensor kinase CitA (citA), response regulator CitB (citB) and transcriptional regulator LtrA (ltrA)genes, complete cds. Jan. 7, 1997.*
Gerharz et al. Identification of Basic Amino Acid Residues Important for Citrate Binding by the Periplasmic Receptor Domain of the Sensor Kinase CitA. Biochemistry (2003) 42: 5917-5924.*
Reinelt et al, The Structure of the Periplasmic Ligand-binding Domain of the Sensor Kinase CitA Reveals the First Extracellular PAS Domain. J. Biol. Chem. (2003) 278(40): 39189-39196.*
Database EMBL; Accession No. AL022374.
Kramer, “Genetic and physiological approaches for the production of amino acids,”Journal of Biotechnology, vol. 45, No. 1, pp. 1-21.
Eikmanns et al., “Molecular aspects of Iysine, threonine, and isolecine biosynthesis inCorynebacterium glutamicum,”Antonie Van Leeuwenhoek, vol. 64, No. 2, pp. 145-163.
Farwick Mike
Hermann Thomas
Marx Achim
Möckel Bettina
Pfefferle Walter
Degussa - AG
Kerr Kathleen
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