Organic compounds -- part of the class 532-570 series – Organic compounds – Carbohydrates or derivatives
Reexamination Certificate
1999-04-28
2010-02-02
Dejong, Eric S (Department: 1631)
Organic compounds -- part of the class 532-570 series
Organic compounds
Carbohydrates or derivatives
C530S300000, C530S350000
Reexamination Certificate
active
07655770
ABSTRACT:
The present invention is in the field of plant biochemistry. More specifically the invention relates to nucleic acid sequences from plant cells, in particular, nucleic acid sequences from maize and soybean associated with the phosphogluconate pathway enzymes. The invention encompasses nucleic acid molecules that encode proteins and fragments of proteins. In addition, the invention also encompasses proteins and fragments of proteins so encoded and antibodies capable of binding these proteins or fragments. The invention also relates to methods of using the nucleic acid molecules, proteins and fragments of proteins and antibodies, for example for genome mapping, gene identification and analysis, plant breeding, preparation of constructs for use in plant gene expression and transgenic plants.
REFERENCES:
patent: 5726053 (1998-03-01), Picataggio et al.
patent: 5912169 (1999-06-01), Schmidt et al.
patent: 6030807 (2000-02-01), De Lencastre et al.
patent: WO 9737028 (1997-10-01), None
Gerhold et al., “It's the genes! EST access to human genome content”, BioEssays vol. 18 No. 12, pp. 973-981.
Wells et al., “The chemokine information source: identification and characterization of novel chemokines using the WorldWideWeb and Expressed Sequence Tag Databases”, Journal of Leukocyte Biology vol. 61 No. 5, May 1997 pp. 545-550.
Russell et al., “Structural Features can be Unconserved in Proteins with Similar Folds”, J. Mol. Biol. (1994) 244, pp. 332-350.
Attwood, “The Babel of Bioingormatics”, Science vol. 290, Oct. 20, 2000.
Katsurada, “Tezukayama-Gakuin Junior College Annual Report of Scientific Studies”, (1996) No. 44 pp. 89-104.
Katsurada, Tezukayma-Gakuin Junior Collgeg Annual Report of Scientific Studies, (1997) No. 45, pp. 58-73.
Lal et al., “Cloning and Characterizaton of an Anaerobically Induced cDNA Encoding Glucose-6-Phosphate Isomerase from Maize”, Plan Physiol. (1995) vol. 108 pp. 1295-1296.
AB007907, GenBank, Oct. 14, 1997.
AF037030, GenBank, Nov. 26, 1998.
Accession D43256, GenBank, May 4, 1998.
Accession AJ000265, GenBank, Aug. 25, 1998.
Accession AB007907, GenBank, Oct. 15, 1997.
Baker et al., “Proein Structure Prediction and Structural Genomics”, Science vol. 294 No. 5 (Oct. 2001),pp. 93-96.
NCBI GI # 3107516, Sequence Revision History Page for AN# D43256, seen at www.ncbi.nlm.nih.gov.
Bouvier et al. NCBI accession No. Y15781, first seen Sep. 9, 1998.
Walbot, V. NCBI accession No. AI586588, first seen Apr. 7, 1999.
Meinkoth et al. Hybridization of nucleic acids immobilized on solid supports. Ananlytical Biochemistry. (1984) vol. 138, pp. 267-284.
de Vetten et al. NCBI accession No. S77133, Sep. 22, 1995.
Fahrendorf et al. NCBI accession No. U18238, Jan. 30, 1997.
Moehs et al. NCBI accession No. U95923, May 11, 1997.
Sasaki, T. NCBI accession No. C73011, Sep. 22, 1997.
Ashihara and Komamine, “Enzyme and Metabolite Profiles of the Pentose Phosphate Pathway in Hypocotyls ofPhaseolus mungoSeedlings” Plant Sci. Lett. 2:331-337 (1974).
Fahrendorf et al., “Stress responses in alfalfa (Medicago sativaL.) XIX. Transcriptional activation of oxidative pentose phosphate pathway genes at the onset of the isoflavonoid phytoalexin response,” Plant Molecular Biology 28: 885-900(1995).
Fristensky et al., Entrez, Accession No. AI352951.
Kohler et al., “Transaldolase genes from the cyanobacteriaAnabaena variabilisandSynechocystissp. PCC 6803: comparison with other eubacterial and eukaryotic homologues,” Plant Molecular Biology 30: 213-218 (1996).
Kohler et al., Entrez, Accession No. AAC41527.
Kohler et al., Entrez, Accession No. L47327.
Kusian et al., “The Calvin Cycle Enzyme Pentose-5-Phosphate 3-Epimerase is Encoded within thecfxOperons of the ChemoautotrophAlcaligenes eutrophus,” J. of Bacteriology 174:7337-7344 (1992).
Kusian et al., Entrez, Accession No. AAA21962.
Kusian et al., Entrez, Accession No. M64173.
Lin et al., Entrez, Accession No. AAD14543.
Lin et al., Entrez, Accession No. AC006200.
Ma et al., “Cloning and Characterization of thePseudomonas aeruginosa zwfGene Encoding Glucose-6-Phosphate Dehydrogenase, an Enzyme Important in Resistance to Methyl Viologen (Pharaquat),” J. Bacteriol. 180:1741-1749 (1998).
Ma et al., Entrez, Accession No. AAD22666.
Ma et al., Entrez, Accession No. AF029673.
Mandel et al., “CLA1, a novel gene required for chloroplast development, is highly conserved in evolution,” Plant J. 9:649-658 (1996).
Mandel et al., Entrez, Accession No. U27099.
Marra et al., Entrez, Accession No. AA162843.
Moehs et al., “Cloning and expression of transaldolase from potato,” Plant Mol. Biol. 32:447-452 (1996).
Redinbaugh et al., Entrez, Accession No. AAC27702.
Redinbaugh et al., Entrez, Accession No. AF061837.
Schnarrenberger et al., “Enzymatic Evidence for a Complete Oxidative Pentose Phosphate Pathway in Chloroplasts and an Incomplete Pathway in the Cytosol of Spinach Leaves,” Plant Physiol. 108:609-614(1995).
Teige et al., “Chloroplast pentose-5-phosphate 3-epimerase from potato:cloning, cDNA sequence, and tissue-specific enzyme accumulation,” FEBS Letters 377:349-352 (1995).
Williams, John F., “A critical examination of the evidence for the reactions of the pentose pathway in animal tissues,” Trends in Biochemical Sciences 5: 315-320 (1980).
Entrez Report, Accession No. CAA52442, Sep. 21, 1994.
K. Graeve, et al., “Purification, characterization, and cDNA sequence of glucose-6-phosphate dehydrogenase from potato (Solanum tuberosumL.),”The Plant Journal5 (3), 353-361 (1994).
Entrez Report, Accession No. CAA89415, Aug. 11, 1997.
C. Cziepluch, et al., “Sequencing analysis of a 40.2 kb fragment of yeast chromosome X reveals 19 open reading frames including URA2 (5′ end), TRK1, PBS2, SPT10, GCD14, RPE1, PHO86, NCA3, ASF1, CCT7, GZF3, Two tRNA genes, three remnant delta elements and a Ty4 transposon,”Yeast12 (14) 1471-1474 (1996).
T. Miosga, et al., “Genetic and Function Analysis of theSaccharomyces cerevisiaeGene Ep11 Encoding Ribulose-5-Phosphat 3-Epimerase,”Yeast11,5500 (1995).
T. Miosga, et al., “Cloning and characterization of the first two genes of the non-oxidative part of theSaccharomyces cerevisiaepentose-phosphate pathway,”Curr. Genet.30 (5), 404-409 (1996).
Entrez Report, Accession No. Z46646, Feb. 6, 1995.
G. Bernacchia, et al., “The transketolase gene family of the resurrection plantCraterostigma plantagineum: differential expression during the rehydration phase,”EMBO Journal14 (3), 610-618 (1995).
Entrez Report, Accession No. AAB54016, May 11, 1997.
C. Moehs, et al., “Cloning and expression of transaldolase from potato,”Plant Molecular Biology32 (3), 447-452, (1996).
Entrez Report, Accession No. AAC75951, Dec. 1, 2000.
F. Blattner, et al., “The complete genome sequence ofEscherichia coliK-12,”Science277 (5331), 1453-1474 (1997).
Entrez Report, Accession No. BAA02920, Feb. 3, 1999.
T. Sakamoto, et al., “Sequence analysis of a DNA fragment fromSynechocystisPCC6803 containing genes homologous to cysE (serine acetyltransferase) and pgi (gucose-6-phosphate isomerase),”Plant Mol. Biol.29, 187 (1995).
Venter, J. Craig, et al., The Sequence of the Human Genome,Science, 291: 1304-1351 (2001).
Woese, Carl R., et al., Conservation of Primary Structure in 16S rRNA,Nature, 254: 83-85 (1975).
Cheikh Nordine
Liu Jingdong
Peschke Virginia M.
Arnold & Porter LLP
Dejong Eric S
Liu Ying-Horng
Madsen Matthew L.
Monsanto Technology LLC
LandOfFree
Nucleic acid molecules and other molecules associated with... does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Nucleic acid molecules and other molecules associated with..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Nucleic acid molecules and other molecules associated with... will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-4183007