Non-standard nucleoside analogs with reduced epimerization

Chemistry: molecular biology and microbiology – Micro-organism – tissue cell culture or enzyme using process... – Preparing compound containing saccharide radical

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C536S027110, C536S028100, C536S029200, C546S262000, C546S264000

Reexamination Certificate

active

08053212

ABSTRACT:
This invention relates to nucleoside, nucleotide, and oligonucleotide analogs that incorporate non-standard nucleobase analogs, defined to be those that present a pattern of hydrogen bonds to a paired nucleobase analog in a complementary strand that is different from the pattern presented by adenine, guanine, cytosine, and thymine. The invention is specifically concerned with compositions of matter that present the donor-donor-acceptor, donor-acceptor-donor, and acceptor-donor-donor non-standard hydrogen bonding patterns on pyrimidine analogs, where nucleoside analogs bearing these pyrimidine analogs do not epimerize as easily as those known in the art. The heterocycles on these nucleoside analogs are diaminopyridines and aminopyridones that have electron withdrawing groups attached to the position analogous to the 5-position of the ring in standard pyrimidines, including nitro, cyano, and carboxylic acid derivatives.

REFERENCES:
patent: 5432272 (1995-07-01), Benner
patent: 6140496 (2000-10-01), Benner
Hutter and Benner, “Expanding the Genetic Alphabet: Non-Epimerizing Nucleoside with the pyDDA Hydrogen Bonding Pattern,” Journal of Organic Chemistry, 68(25), 9839-9842 (2003); Web publ. Nov. 13, 2003).
Yang et al., “Artificially Expanded Genetic Information System: A New Base Pair with Alternative Hydrogen Bonding Pattern,” Nucleic Acids Research, 34(21), 6095-6101 (2006); Web publ. Oct. 29, 2006).
Watanabe et al., “Novel Ring Transformation Reactions and Their Applications to the Synthesis of Potential Anticancer Heterocyclic Compounds,” Heterocycles. 21(1), 289-307 (1984).
Sheng, P. P., Yang, Z. Y., Kim, Y. M., Wu, Y. R., Tan, W. H. Benner, S. A. (2008) Design of a novel molecular beacon. Modification of the stem with artificially genetic alphabet. Chem. Comm. (41), 5128-5130.
Yang, Z., Hutter, D., Sheng, P., Sismour, A. M., Benner, S. A. (2006) Artificially expanded genetic information system: A new base pair with an alternative hydrogen bonding pattern. Nucl. Acids Res. 34, 6095-6101.
Yang, Z., Sismour, A. M., Sheng, P., Puskar, N. L., Benner, S. A. (2007) Enzymatic incorporation of a third nucleobase pair. Nucl. Acids Res. 35, 4238-4249.
Yang, Z., Chen, F., Chamberlin, S. G., Benner, S. A. (2010) Expanded genetic alphabets in the polymerase chain reaction. Angew. Chem. 49, 177-180.
Robbins, D.J., Barkley, M.D., Coleman, M.S. (1987) Interaction of terminal transferase with single-stranded DNA. J of Biol.Chem. 262, 9494-9502.
von Krosigk, U., Benner, S. A. (1995) pH-independent triple helix formation by an oligonucleotide containing a pyrazine donor-donor-acceptor base. J. Am. Chem. Soc. 117, 5361-5362.
Voegel, J. J., Benner, S. A. (1994) Non-standard hydrogen bonding in duplex oligonucleotides. The base pair between an acceptor-donor-donor pyrimidine analog and a donor-acceptor-acceptor purine analog. J. Am. Chem. Soc. 116, 6929-6930.

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Non-standard nucleoside analogs with reduced epimerization does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Non-standard nucleoside analogs with reduced epimerization, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Non-standard nucleoside analogs with reduced epimerization will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-4285490

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.