Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Reexamination Certificate
2007-11-06
2007-11-06
Fredman, Jeffrey (Department: 1637)
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
Reexamination Certificate
active
10452157
ABSTRACT:
Methods for the sequencing of polynucleotides are provided. Also provided are multiplex systems for sequencing polynucleotides using the disclosed methods, kits for use with the disclosed methods and methods for diagnosing diseases and adverse drug reactions using the disclosed methods.
REFERENCES:
patent: 4355153 (1982-10-01), Radici et al.
patent: 4415732 (1983-11-01), Caruthers et al.
patent: 4458066 (1984-07-01), Caruthers et al.
patent: 4652613 (1987-03-01), Collins et al.
patent: 4683195 (1987-07-01), Mullis et al.
patent: 4683202 (1987-07-01), Mullis
patent: 4725677 (1988-02-01), Koster et al.
patent: 4800159 (1989-01-01), Mullis et al.
patent: 4965188 (1990-10-01), Mullis et al.
patent: 4973679 (1990-11-01), Caruthers et al.
patent: 4980460 (1990-12-01), Molko et al.
patent: 5068269 (1991-11-01), Diamantoglou
patent: 5302509 (1994-04-01), Cheeseman
patent: 5552278 (1996-09-01), Brenner
patent: 5578832 (1996-11-01), Trulson et al.
patent: 5599675 (1997-02-01), Brenner
patent: 5599695 (1997-02-01), Pease et al.
patent: 5632957 (1997-05-01), Heller et al.
patent: 5698089 (1997-12-01), Lewis et al.
patent: 5710000 (1998-01-01), Sapolsky et al.
patent: 5714330 (1998-02-01), Brenner
patent: 5795557 (1998-08-01), Pajonk et al.
patent: 5831065 (1998-11-01), Brenner
patent: 5843767 (1998-12-01), Beattie
patent: 5858671 (1999-01-01), Jones
patent: 5939261 (1999-08-01), Loewy et al.
patent: 5981956 (1999-11-01), Stern
patent: 5990479 (1999-11-01), Weiss et al.
patent: 6013445 (2000-01-01), Albrecht et al.
patent: 6024872 (2000-02-01), Mahendran et al.
patent: 6025601 (2000-02-01), Trulson et al.
patent: 6027894 (2000-02-01), Sapolsky et al.
patent: 6045996 (2000-04-01), Cronin et al.
patent: 6048457 (2000-04-01), Kopaciewicz et al.
patent: 6066448 (2000-05-01), Wohlstadter et al.
patent: 6083763 (2000-07-01), Balch
patent: 6096817 (2000-08-01), Mc Namara
patent: 6150147 (2000-11-01), Goldberg et al.
patent: 6197498 (2001-03-01), Koster
patent: 6197503 (2001-03-01), Vo-Dinh et al.
patent: 6207229 (2001-03-01), Bawendi et al.
patent: 6207392 (2001-03-01), Weiss et al.
patent: 6225077 (2001-05-01), Schmidt et al.
patent: 6251600 (2001-06-01), Winger et al.
patent: 6258533 (2001-07-01), Jones
patent: 6268222 (2001-07-01), Chandler et al.
patent: 6291181 (2001-09-01), Sapolsky et al.
patent: 2002/0080350 (2002-06-01), Lafferty
patent: 0703991 (2001-05-01), None
patent: 0927267 (2002-04-01), None
patent: WO9106678 (1991-05-01), None
patent: WO9321340 (1993-10-01), None
patent: WO9612039 (1996-04-01), None
patent: WO9810095 (1998-03-01), None
patent: WO9815652 (1998-04-01), None
patent: WO9848047 (1998-10-01), None
patent: WO9937814 (1999-07-01), None
patent: WO0113120 (2001-02-01), None
Chan et al (Science (1998) 281:2016-2018).
Allawi and Santalucia, Thermodynamics and NMR of internal G.T mismatches in DNA. Biochemistry. Aug. 26, 1997;36(34):10581-94.
Alves and Carr, Dot blot detection of point mutations with adjacently hybridising synthetic oligonucleotide probes. Nucleic Acids Res. Sep. 12, 1988;16(17):8723.
Beaucage and Iyer, Advances in the Synthesis of Oligonucleotides by the Phosphoramidite Approach, Tetrahedron, Mar. 1992, 48(12):2223-2311.
Bommarito, et al., Thermodynamic parameters for DNA sequences with dangling ends. Nucleic Acids Res. May 1, 2000;28(9):1929-34.
Brenner et al., In vitro cloning of complex mixtures of DNA on microbeads: physical separation of differentially expressed cDNAs. Proc Natl Acad Sci U S A. Feb. 15, 2000;97(4):1665-70.
Canard and Sarfati, DNA polymerase fluorescent substrates with reversible 3′-tags. Gene. Oct. 11, 1994;148(1):1-6.
Ferris et al., N-cyanomidazole and diimidazole imine: water-soluble condensing agents for the formation of the phophodiester bond, Nucleosides & Nucleotides, 1989, 8: 407-414.
Guatelli, et al., Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication. Proc Natl Acad Sci U S A. Mar. 1990;87(5):1874-8.
Han and Rutter, Lambda gt22S, a phage expression vector for the directional cloning of cDNA by the use of a single restriction enzyme Sfil. Nucleic Acids Res. Dec. 23, 1988;16(24)11837.
Han, et al., Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry. Nat Biotechnol. Oct. 2001;19(10):946-51.
Hunkapiller, et al., Large-scale and automated DNA sequence determination. Science. Oct. 4, 1991;254(5028):59-67.
Kwoh, et al., Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format. Proc Natl Acad Sci U S A. Feb. 1989;86(4):1173-7.
Landegren, et al., A ligase-mediated gene detection technique. Science. Aug. 26, 1988;241(4869):1077-80.
Maxam and Gilbert, A new method for sequencing DNA. Proc Natl Acad Sci U S A. Feb. 1977;74(2)560-4.
Metzker, et al., Termination of DNA synthesis by novel 3′-modified-deoxyribonucleoside 5′-triphosphates. Nucleic Acids Res. Oct. 11, 1994;22(20):4259-67.
Nelson, et al., Effect of site-specific methylation on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res. Jul. 1, 1993;21(13):3139-54.
Nicewarner-Pena, et al., Submicrometer metallic barcodes. Science. Oct. 5, 2001;294(5540):137-41.
Padgett and Sorge, Creating seamless junctions independent of restriction sites in PCR cloning. Gene. Feb. 2, 1996;168(1):31-5.
Pirmohamed and Park, Genetic susceptibility to adverse drug reactions, Trends Pharmacol Sci., Jun. 2001,22(6):298-305.
Polyak and Riggins, Gene discovery using the serial analysis of gene expression technique: implications for cancer research, J Clin Oncol, Jun. 1, 2001, 19(11):2948-58.
Roberts, et al., REBASE: restriction enzymes and methyltransferases. Nucleic Acids Res. Jan. 1, 2003;31(1):418-20.
Samiotaki, et al., Dual-color detection of DNA sequence variants by ligase-mediated analysis. Genomics. Mar. 15, 1994;20(2):238-42.
Sanger, et al., DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. Dec. 1977;74(12):5463-7.
Santalucia, A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci U S A. Feb. 17, 1998;95(4):1460-5.
Shabarova, et al., Chemical ligation of DNA: the first non-enzymatic assembly of a biologically active gene. Nucleic Acids Res. Aug. 11, 1991;19(15):4247-51.
Somers, et al., A rapid, reliable method for detection of known point mutations: point-EXACCT. Nucleic Acids Res. Nov. 11, 1994, 22(22):4840-1.
Wu and Wallace, Specificity of the nick-closing activity of bacteriophage T4 DNA ligase. Gene. 1989;76(2):245-54.
Wu and Wallace, The ligation amplification reaction (LAR)—amplification of specific DNA sequences using sequential rounds of template-dependent ligation. Genomics. May 1989;4(4):560-9.
Butler James
Lafferty Mike
Tweedy Charles
Fredman Jeffrey
Fuzail Kalim
Verenium Corporation
LandOfFree
Multiplexed systems for nucleic acid sequencing does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Multiplexed systems for nucleic acid sequencing, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Multiplexed systems for nucleic acid sequencing will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-3812040